Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01630

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01620 and LU632_RS01625 overlap by 4 nucleotidesLU632_RS01625 and LU632_RS01630 are separated by 4 nucleotidesLU632_RS01630 and LU632_RS01635 overlap by 4 nucleotidesLU632_RS01635 and LU632_RS01640 overlap by 4 nucleotides LU632_RS01620: LU632_RS01620 - lysozyme, at 322,671 to 323,216 _RS01620 LU632_RS01625: LU632_RS01625 - DUF2514 domain-containing protein, at 323,213 to 323,728 _RS01625 LU632_RS01630: LU632_RS01630 - phage tail protein, at 323,733 to 324,194 _RS01630 LU632_RS01635: LU632_RS01635 - phage virion morphogenesis protein, at 324,191 to 324,829 _RS01635 LU632_RS01640: LU632_RS01640 - phage baseplate assembly protein V, at 324,826 to 325,401 _RS01640 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 322.774 kb on + strand, within LU632_RS01620at 322.797 kb on - strand, within LU632_RS01620at 322.797 kb on - strand, within LU632_RS01620at 322.872 kb on + strand, within LU632_RS01620at 322.931 kb on + strand, within LU632_RS01620at 322.932 kb on - strand, within LU632_RS01620at 322.956 kb on + strand, within LU632_RS01620at 322.956 kb on + strand, within LU632_RS01620at 322.956 kb on + strand, within LU632_RS01620at 322.957 kb on - strand, within LU632_RS01620at 322.957 kb on - strand, within LU632_RS01620at 322.957 kb on - strand, within LU632_RS01620at 322.957 kb on - strand, within LU632_RS01620at 322.957 kb on - strand, within LU632_RS01620at 322.958 kb on + strand, within LU632_RS01620at 323.005 kb on + strand, within LU632_RS01620at 323.005 kb on + strand, within LU632_RS01620at 323.005 kb on + strand, within LU632_RS01620at 323.006 kb on - strand, within LU632_RS01620at 323.006 kb on - strand, within LU632_RS01620at 323.006 kb on - strand, within LU632_RS01620at 323.006 kb on - strand, within LU632_RS01620at 323.012 kb on + strand, within LU632_RS01620at 323.013 kb on - strand, within LU632_RS01620at 323.063 kb on + strand, within LU632_RS01620at 323.084 kb on - strand, within LU632_RS01620at 323.239 kb on - strandat 323.283 kb on - strand, within LU632_RS01625at 323.283 kb on - strand, within LU632_RS01625at 323.283 kb on - strand, within LU632_RS01625at 323.283 kb on - strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.285 kb on - strand, within LU632_RS01625at 323.285 kb on - strand, within LU632_RS01625at 323.285 kb on - strand, within LU632_RS01625at 323.727 kb on - strandat 323.729 kb on + strandat 323.730 kb on - strandat 323.730 kb on - strandat 323.865 kb on + strand, within LU632_RS01630at 323.866 kb on - strand, within LU632_RS01630at 323.874 kb on - strand, within LU632_RS01630at 323.997 kb on - strand, within LU632_RS01630at 324.247 kb on + strandat 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.400 kb on - strand, within LU632_RS01635at 324.400 kb on - strand, within LU632_RS01635at 324.400 kb on - strand, within LU632_RS01635at 324.493 kb on + strand, within LU632_RS01635at 324.533 kb on + strand, within LU632_RS01635at 324.533 kb on + strand, within LU632_RS01635at 324.534 kb on - strand, within LU632_RS01635at 324.534 kb on - strand, within LU632_RS01635at 324.534 kb on - strand, within LU632_RS01635at 324.657 kb on - strand, within LU632_RS01635at 324.676 kb on + strand, within LU632_RS01635at 324.733 kb on + strand, within LU632_RS01635at 324.738 kb on - strand, within LU632_RS01635at 325.023 kb on + strand, within LU632_RS01640at 325.067 kb on - strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
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322,774 + LU632_RS01620 0.19 +0.2
322,797 - LU632_RS01620 0.23 +0.4
322,797 - LU632_RS01620 0.23 -0.2
322,872 + LU632_RS01620 0.37 +1.2
322,931 + LU632_RS01620 0.48 +2.4
322,932 - LU632_RS01620 0.48 +2.8
322,956 + LU632_RS01620 0.52 -0.3
322,956 + LU632_RS01620 0.52 -1.1
322,956 + LU632_RS01620 0.52 +0.1
322,957 - LU632_RS01620 0.52 +0.5
322,957 - LU632_RS01620 0.52 +1.5
322,957 - LU632_RS01620 0.52 -0.1
322,957 - LU632_RS01620 0.52 -1.3
322,957 - LU632_RS01620 0.52 +3.9
322,958 + LU632_RS01620 0.53 -0.4
323,005 + LU632_RS01620 0.61 -0.5
323,005 + LU632_RS01620 0.61 -1.3
323,005 + LU632_RS01620 0.61 +0.3
323,006 - LU632_RS01620 0.61 +0.6
323,006 - LU632_RS01620 0.61 +0.2
323,006 - LU632_RS01620 0.61 +1.7
323,006 - LU632_RS01620 0.61 -0.3
323,012 + LU632_RS01620 0.62 -1.1
323,013 - LU632_RS01620 0.63 +1.1
323,063 + LU632_RS01620 0.72 -0.0
323,084 - LU632_RS01620 0.76 -1.3
323,239 - -0.8
323,283 - LU632_RS01625 0.14 +6.9
323,283 - LU632_RS01625 0.14 -0.7
323,283 - LU632_RS01625 0.14 -0.5
323,283 - LU632_RS01625 0.14 -0.5
323,284 + LU632_RS01625 0.14 +0.8
323,284 + LU632_RS01625 0.14 -0.8
323,284 + LU632_RS01625 0.14 +1.2
323,284 + LU632_RS01625 0.14 -0.9
323,285 - LU632_RS01625 0.14 -1.1
323,285 - LU632_RS01625 0.14 -0.5
323,285 - LU632_RS01625 0.14 -1.6
323,727 - -1.0
323,729 + -0.0
323,730 - -2.3
323,730 - -0.3
323,865 + LU632_RS01630 0.29 -1.4
323,866 - LU632_RS01630 0.29 +0.7
323,874 - LU632_RS01630 0.31 -2.7
323,997 - LU632_RS01630 0.57 -0.9
324,247 + -1.8
324,399 + LU632_RS01635 0.33 -0.4
324,399 + LU632_RS01635 0.33 -0.3
324,399 + LU632_RS01635 0.33 +1.0
324,399 + LU632_RS01635 0.33 -0.3
324,399 + LU632_RS01635 0.33 +4.4
324,399 + LU632_RS01635 0.33 -1.3
324,399 + LU632_RS01635 0.33 -1.6
324,400 - LU632_RS01635 0.33 -1.5
324,400 - LU632_RS01635 0.33 +1.0
324,400 - LU632_RS01635 0.33 -0.8
324,493 + LU632_RS01635 0.47 -0.0
324,533 + LU632_RS01635 0.54 -2.2
324,533 + LU632_RS01635 0.54 -0.4
324,534 - LU632_RS01635 0.54 -2.8
324,534 - LU632_RS01635 0.54 -1.1
324,534 - LU632_RS01635 0.54 +0.5
324,657 - LU632_RS01635 0.73 -1.1
324,676 + LU632_RS01635 0.76 -1.3
324,733 + LU632_RS01635 0.85 -1.1
324,738 - LU632_RS01635 0.86 +0.4
325,023 + LU632_RS01640 0.34 +0.2
325,067 - LU632_RS01640 0.42 +1.9
325,194 + LU632_RS01640 0.64 +0.2
325,194 + LU632_RS01640 0.64 -1.9
325,194 + LU632_RS01640 0.64 -0.3
325,194 + LU632_RS01640 0.64 -2.2

Or see this region's nucleotide sequence