Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01465

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01455 and LU632_RS01460 are separated by 11 nucleotidesLU632_RS01460 and LU632_RS01465 are separated by 127 nucleotidesLU632_RS01465 and LU632_RS01470 are separated by 10 nucleotides LU632_RS01455: LU632_RS01455 - TIGR03756 family integrating conjugative element protein, at 298,461 to 299,432 _RS01455 LU632_RS01460: LU632_RS01460 - integrating conjugative element protein, at 299,444 to 300,148 _RS01460 LU632_RS01465: LU632_RS01465 - hypothetical protein, at 300,276 to 300,611 _RS01465 LU632_RS01470: LU632_RS01470 - conjugal transfer protein TraG N-terminal domain-containing protein, at 300,622 to 301,386 _RS01470 Position (kb) 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 299.795 kb on - strand, within LU632_RS01460at 299.795 kb on - strand, within LU632_RS01460at 299.927 kb on + strand, within LU632_RS01460at 299.972 kb on + strand, within LU632_RS01460at 299.973 kb on - strand, within LU632_RS01460at 299.973 kb on - strand, within LU632_RS01460at 300.321 kb on - strand, within LU632_RS01465at 300.321 kb on - strand, within LU632_RS01465at 300.509 kb on - strand, within LU632_RS01465at 300.585 kb on + strandat 300.586 kb on - strandat 300.646 kb on + strandat 300.736 kb on - strand, within LU632_RS01470at 300.736 kb on - strand, within LU632_RS01470at 300.797 kb on + strand, within LU632_RS01470at 300.797 kb on + strand, within LU632_RS01470at 300.798 kb on - strand, within LU632_RS01470at 300.798 kb on - strand, within LU632_RS01470at 300.825 kb on + strand, within LU632_RS01470at 300.826 kb on - strand, within LU632_RS01470at 300.829 kb on + strand, within LU632_RS01470at 300.829 kb on + strand, within LU632_RS01470at 300.829 kb on + strand, within LU632_RS01470at 300.830 kb on - strand, within LU632_RS01470at 300.830 kb on - strand, within LU632_RS01470at 300.830 kb on - strand, within LU632_RS01470at 301.024 kb on + strand, within LU632_RS01470at 301.028 kb on - strand, within LU632_RS01470

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
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299,795 - LU632_RS01460 0.50 +2.6
299,795 - LU632_RS01460 0.50 -0.5
299,927 + LU632_RS01460 0.69 -1.9
299,972 + LU632_RS01460 0.75 +0.2
299,973 - LU632_RS01460 0.75 -1.0
299,973 - LU632_RS01460 0.75 -0.3
300,321 - LU632_RS01465 0.13 -1.1
300,321 - LU632_RS01465 0.13 -1.7
300,509 - LU632_RS01465 0.69 -0.7
300,585 + -1.3
300,586 - -1.7
300,646 + -0.5
300,736 - LU632_RS01470 0.15 +1.7
300,736 - LU632_RS01470 0.15 +0.3
300,797 + LU632_RS01470 0.23 -1.9
300,797 + LU632_RS01470 0.23 -0.2
300,798 - LU632_RS01470 0.23 -0.7
300,798 - LU632_RS01470 0.23 +0.7
300,825 + LU632_RS01470 0.27 +0.3
300,826 - LU632_RS01470 0.27 -0.7
300,829 + LU632_RS01470 0.27 -0.2
300,829 + LU632_RS01470 0.27 -1.5
300,829 + LU632_RS01470 0.27 -1.3
300,830 - LU632_RS01470 0.27 -1.0
300,830 - LU632_RS01470 0.27 +0.0
300,830 - LU632_RS01470 0.27 -0.9
301,024 + LU632_RS01470 0.53 +1.3
301,028 - LU632_RS01470 0.53 -0.2

Or see this region's nucleotide sequence