Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00810

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntugpC and LU632_RS00810 are separated by 27 nucleotidesLU632_RS00810 and LU632_RS00815 overlap by 11 nucleotidesLU632_RS00815 and LU632_RS00820 are separated by 9 nucleotides LU632_RS00805: ugpC - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 175,371 to 176,495 ugpC LU632_RS00810: LU632_RS00810 - carbohydrate ABC transporter permease, at 176,523 to 177,362 _RS00810 LU632_RS00815: LU632_RS00815 - sugar ABC transporter permease, at 177,352 to 178,260 _RS00815 LU632_RS00820: LU632_RS00820 - extracellular solute-binding protein, at 178,270 to 179,520 _RS00820 Position (kb) 176 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 175.532 kb on + strand, within ugpCat 175.724 kb on + strand, within ugpCat 175.930 kb on + strand, within ugpCat 175.930 kb on + strand, within ugpCat 175.931 kb on - strand, within ugpCat 175.940 kb on + strand, within ugpCat 175.980 kb on + strand, within ugpCat 175.988 kb on + strand, within ugpCat 175.988 kb on + strand, within ugpCat 175.988 kb on + strand, within ugpCat 175.988 kb on + strand, within ugpCat 175.988 kb on + strand, within ugpCat 175.989 kb on - strand, within ugpCat 175.992 kb on + strand, within ugpCat 175.992 kb on + strand, within ugpCat 175.992 kb on + strand, within ugpCat 175.992 kb on + strand, within ugpCat 175.993 kb on - strand, within ugpCat 175.993 kb on - strand, within ugpCat 175.993 kb on - strand, within ugpCat 176.115 kb on + strand, within ugpCat 176.496 kb on - strandat 176.585 kb on + strandat 176.586 kb on - strandat 176.589 kb on + strandat 176.696 kb on + strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.697 kb on - strand, within LU632_RS00810at 176.705 kb on + strand, within LU632_RS00810at 176.719 kb on + strand, within LU632_RS00810at 176.720 kb on - strand, within LU632_RS00810at 176.867 kb on + strand, within LU632_RS00810at 176.868 kb on - strand, within LU632_RS00810at 176.920 kb on + strand, within LU632_RS00810at 176.921 kb on - strand, within LU632_RS00810at 176.946 kb on - strand, within LU632_RS00810at 177.011 kb on + strand, within LU632_RS00810at 177.011 kb on + strand, within LU632_RS00810at 177.012 kb on - strand, within LU632_RS00810at 177.012 kb on - strand, within LU632_RS00810at 177.013 kb on + strand, within LU632_RS00810at 177.013 kb on - strand, within LU632_RS00810at 177.014 kb on - strand, within LU632_RS00810at 177.014 kb on - strand, within LU632_RS00810at 177.353 kb on + strandat 177.363 kb on - strandat 177.404 kb on + strandat 177.404 kb on + strandat 177.404 kb on + strandat 177.405 kb on - strandat 177.405 kb on - strandat 177.412 kb on + strandat 177.449 kb on + strand, within LU632_RS00815at 177.495 kb on - strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.551 kb on + strand, within LU632_RS00815at 177.552 kb on - strand, within LU632_RS00815at 177.552 kb on - strand, within LU632_RS00815at 177.728 kb on - strand, within LU632_RS00815at 177.957 kb on - strand, within LU632_RS00815at 178.032 kb on - strand, within LU632_RS00815at 178.080 kb on - strand, within LU632_RS00815at 178.086 kb on - strand, within LU632_RS00815at 178.086 kb on - strand, within LU632_RS00815at 178.104 kb on - strand, within LU632_RS00815at 178.122 kb on + strand, within LU632_RS00815at 178.122 kb on + strand, within LU632_RS00815at 178.123 kb on - strand, within LU632_RS00815at 178.126 kb on + strand, within LU632_RS00815at 178.127 kb on - strand, within LU632_RS00815at 178.127 kb on - strand, within LU632_RS00815at 178.198 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.271 kb on + strandat 178.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
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175,532 + ugpC LU632_RS00805 0.14 -1.2
175,724 + ugpC LU632_RS00805 0.31 -0.8
175,930 + ugpC LU632_RS00805 0.50 -0.5
175,930 + ugpC LU632_RS00805 0.50 -0.0
175,931 - ugpC LU632_RS00805 0.50 -0.3
175,940 + ugpC LU632_RS00805 0.51 -1.4
175,980 + ugpC LU632_RS00805 0.54 +1.9
175,988 + ugpC LU632_RS00805 0.55 -1.1
175,988 + ugpC LU632_RS00805 0.55 -0.6
175,988 + ugpC LU632_RS00805 0.55 +1.4
175,988 + ugpC LU632_RS00805 0.55 -0.4
175,988 + ugpC LU632_RS00805 0.55 +4.3
175,989 - ugpC LU632_RS00805 0.55 +0.1
175,992 + ugpC LU632_RS00805 0.55 -3.4
175,992 + ugpC LU632_RS00805 0.55 +1.2
175,992 + ugpC LU632_RS00805 0.55 +0.6
175,992 + ugpC LU632_RS00805 0.55 +1.8
175,993 - ugpC LU632_RS00805 0.55 -1.3
175,993 - ugpC LU632_RS00805 0.55 +0.7
175,993 - ugpC LU632_RS00805 0.55 +0.6
176,115 + ugpC LU632_RS00805 0.66 -2.3
176,496 - -1.8
176,585 + -0.1
176,586 - -1.4
176,589 + -1.8
176,696 + LU632_RS00810 0.21 -0.2
176,697 - LU632_RS00810 0.21 -0.1
176,697 - LU632_RS00810 0.21 -0.2
176,697 - LU632_RS00810 0.21 -1.5
176,697 - LU632_RS00810 0.21 +0.2
176,705 + LU632_RS00810 0.22 +2.8
176,719 + LU632_RS00810 0.23 -1.4
176,720 - LU632_RS00810 0.23 +0.6
176,867 + LU632_RS00810 0.41 -0.6
176,868 - LU632_RS00810 0.41 -1.8
176,920 + LU632_RS00810 0.47 +1.2
176,921 - LU632_RS00810 0.47 -1.1
176,946 - LU632_RS00810 0.50 -1.0
177,011 + LU632_RS00810 0.58 -0.6
177,011 + LU632_RS00810 0.58 -3.9
177,012 - LU632_RS00810 0.58 +0.2
177,012 - LU632_RS00810 0.58 +0.4
177,013 + LU632_RS00810 0.58 -2.1
177,013 - LU632_RS00810 0.58 -1.4
177,014 - LU632_RS00810 0.58 -1.0
177,014 - LU632_RS00810 0.58 -1.8
177,353 + -1.2
177,363 - +0.1
177,404 + +0.2
177,404 + -1.3
177,404 + -0.3
177,405 - -1.5
177,405 - -1.4
177,412 + -1.0
177,449 + LU632_RS00815 0.11 -1.5
177,495 - LU632_RS00815 0.16 +1.7
177,551 + LU632_RS00815 0.22 -0.7
177,551 + LU632_RS00815 0.22 -0.6
177,551 + LU632_RS00815 0.22 +0.2
177,551 + LU632_RS00815 0.22 +2.2
177,552 - LU632_RS00815 0.22 -0.3
177,552 - LU632_RS00815 0.22 -0.4
177,728 - LU632_RS00815 0.41 -1.9
177,957 - LU632_RS00815 0.67 -1.1
178,032 - LU632_RS00815 0.75 +0.2
178,080 - LU632_RS00815 0.80 -1.1
178,086 - LU632_RS00815 0.81 +1.9
178,086 - LU632_RS00815 0.81 +1.9
178,104 - LU632_RS00815 0.83 -2.2
178,122 + LU632_RS00815 0.85 -1.5
178,122 + LU632_RS00815 0.85 -0.4
178,123 - LU632_RS00815 0.85 -0.7
178,126 + LU632_RS00815 0.85 +0.6
178,127 - LU632_RS00815 0.85 -1.4
178,127 - LU632_RS00815 0.85 +1.6
178,198 + -1.5
178,271 + +1.3
178,271 + -1.9
178,271 + -1.6
178,271 + +3.8
178,271 + -1.2
178,271 + -0.2
178,271 + -0.1
178,272 - +1.0

Or see this region's nucleotide sequence