Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00780

Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00775 and kdpF are separated by 447 nucleotideskdpF and kdpA overlap by 1 nucleotides LU632_RS00775: LU632_RS00775 - IS481 family transposase, at 165,992 to 167,032 _RS00775 LU632_RS00780: kdpF - K(+)-transporting ATPase subunit F, at 167,480 to 167,569 kdpF LU632_RS00785: kdpA - potassium-transporting ATPase subunit KdpA, at 167,569 to 169,254 kdpA Position (kb) 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.152 kb on + strandat 167.153 kb on - strandat 167.236 kb on - strandat 167.360 kb on - strandat 167.370 kb on - strandat 167.370 kb on - strandat 167.370 kb on - strandat 167.370 kb on - strandat 167.447 kb on + strandat 167.447 kb on + strandat 167.447 kb on + strandat 167.447 kb on + strandat 167.447 kb on + strandat 167.447 kb on + strandat 167.447 kb on + strandat 167.493 kb on + strand, within kdpFat 167.493 kb on + strand, within kdpFat 167.538 kb on + strand, within kdpFat 167.538 kb on + strand, within kdpFat 167.538 kb on + strand, within kdpFat 167.539 kb on - strand, within kdpFat 167.539 kb on - strand, within kdpFat 167.539 kb on - strand, within kdpFat 167.540 kb on + strand, within kdpFat 167.602 kb on + strandat 167.602 kb on + strandat 167.605 kb on - strandat 167.684 kb on + strandat 167.685 kb on - strandat 167.799 kb on + strand, within kdpAat 168.276 kb on + strand, within kdpAat 168.484 kb on - strand, within kdpAat 168.484 kb on - strand, within kdpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
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167,152 + -0.6
167,153 - -3.4
167,236 - -1.0
167,360 - -1.3
167,370 - -0.3
167,370 - -1.6
167,370 - +0.8
167,370 - -0.4
167,447 + -0.1
167,447 + +0.0
167,447 + -0.9
167,447 + -0.9
167,447 + -0.2
167,447 + -1.7
167,447 + -1.9
167,493 + kdpF LU632_RS00780 0.14 -2.7
167,493 + kdpF LU632_RS00780 0.14 -1.4
167,538 + kdpF LU632_RS00780 0.64 +0.6
167,538 + kdpF LU632_RS00780 0.64 -1.5
167,538 + kdpF LU632_RS00780 0.64 -2.5
167,539 - kdpF LU632_RS00780 0.66 -2.2
167,539 - kdpF LU632_RS00780 0.66 -0.1
167,539 - kdpF LU632_RS00780 0.66 +0.2
167,540 + kdpF LU632_RS00780 0.67 -0.5
167,602 + -1.1
167,602 + +1.1
167,605 - +1.1
167,684 + +0.4
167,685 - +2.8
167,799 + kdpA LU632_RS00785 0.14 -0.9
168,276 + kdpA LU632_RS00785 0.42 +3.4
168,484 - kdpA LU632_RS00785 0.54 +1.0
168,484 - kdpA LU632_RS00785 0.54 +0.1

Or see this region's nucleotide sequence