Experiment: Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00105 and LU632_RS00110 are separated by 46 nucleotides LU632_RS00110 and LU632_RS00115 are separated by 107 nucleotides
LU632_RS00105: LU632_RS00105 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,353 to 21,589
_RS00105
LU632_RS00110: LU632_RS00110 - hypothetical protein, at 21,636 to 22,070
_RS00110
LU632_RS00115: LU632_RS00115 - acyltransferase, at 22,178 to 23,233
_RS00115
Position (kb) 21
22
23 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.823 kb on - strand, within LU632_RS00105 at 20.890 kb on + strand, within LU632_RS00105 at 20.890 kb on + strand, within LU632_RS00105 at 20.890 kb on + strand, within LU632_RS00105 at 20.891 kb on - strand, within LU632_RS00105 at 20.891 kb on - strand, within LU632_RS00105 at 20.936 kb on - strand, within LU632_RS00105 at 21.100 kb on + strand, within LU632_RS00105 at 21.100 kb on + strand, within LU632_RS00105 at 21.101 kb on - strand, within LU632_RS00105 at 21.133 kb on + strand, within LU632_RS00105 at 21.134 kb on - strand, within LU632_RS00105 at 21.134 kb on - strand, within LU632_RS00105 at 21.134 kb on - strand, within LU632_RS00105 at 21.194 kb on - strand, within LU632_RS00105 at 21.194 kb on - strand, within LU632_RS00105 at 21.209 kb on - strand, within LU632_RS00105 at 21.333 kb on - strand, within LU632_RS00105 at 21.333 kb on - strand, within LU632_RS00105 at 21.434 kb on - strand, within LU632_RS00105 at 21.495 kb on + strand at 21.496 kb on - strand at 21.583 kb on - strand at 21.742 kb on - strand, within LU632_RS00110 at 21.742 kb on - strand, within LU632_RS00110 at 21.777 kb on + strand, within LU632_RS00110 at 21.777 kb on + strand, within LU632_RS00110 at 21.778 kb on - strand, within LU632_RS00110 at 21.929 kb on + strand, within LU632_RS00110 at 21.952 kb on - strand, within LU632_RS00110 at 21.999 kb on + strand, within LU632_RS00110 at 22.000 kb on - strand, within LU632_RS00110 at 22.000 kb on - strand, within LU632_RS00110 at 22.003 kb on - strand, within LU632_RS00110 at 22.003 kb on - strand, within LU632_RS00110 at 22.098 kb on - strand at 22.146 kb on + strand at 22.146 kb on + strand at 22.149 kb on - strand at 22.151 kb on + strand at 22.151 kb on + strand at 22.151 kb on + strand at 22.320 kb on - strand, within LU632_RS00115 at 22.460 kb on + strand, within LU632_RS00115 at 22.460 kb on + strand, within LU632_RS00115 at 22.460 kb on + strand, within LU632_RS00115 at 22.610 kb on + strand, within LU632_RS00115 at 22.611 kb on - strand, within LU632_RS00115 at 22.650 kb on - strand, within LU632_RS00115 at 22.650 kb on - strand, within LU632_RS00115 at 22.670 kb on + strand, within LU632_RS00115 at 22.670 kb on + strand, within LU632_RS00115 at 22.796 kb on - strand, within LU632_RS00115 at 22.814 kb on + strand, within LU632_RS00115 at 22.815 kb on - strand, within LU632_RS00115 at 22.965 kb on - strand, within LU632_RS00115 at 23.029 kb on + strand, within LU632_RS00115 at 23.029 kb on + strand, within LU632_RS00115 at 23.037 kb on - strand, within LU632_RS00115 at 23.037 kb on - strand, within LU632_RS00115 at 23.041 kb on - strand, within LU632_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Main Stem (TE2-S-C9-MS) remove 20,715 + LU632_RS00105 0.29 -1.0 20,715 + LU632_RS00105 0.29 -0.9 20,715 + LU632_RS00105 0.29 -1.1 20,715 + LU632_RS00105 0.29 -1.4 20,715 + LU632_RS00105 0.29 -3.0 20,715 + LU632_RS00105 0.29 -0.4 20,715 + LU632_RS00105 0.29 +2.5 20,715 + LU632_RS00105 0.29 -2.1 20,716 - LU632_RS00105 0.29 +0.1 20,716 - LU632_RS00105 0.29 -0.7 20,716 - LU632_RS00105 0.29 -0.9 20,716 - LU632_RS00105 0.29 +1.6 20,716 - LU632_RS00105 0.29 +0.0 20,716 - LU632_RS00105 0.29 +3.8 20,716 - LU632_RS00105 0.29 -2.4 20,717 + LU632_RS00105 0.29 +0.9 20,717 + LU632_RS00105 0.29 +0.2 20,717 + LU632_RS00105 0.29 +3.4 20,717 + LU632_RS00105 0.29 +0.4 20,718 - LU632_RS00105 0.30 -0.6 20,718 - LU632_RS00105 0.30 +1.2 20,718 - LU632_RS00105 0.30 +0.6 20,718 - LU632_RS00105 0.30 +1.2 20,718 - LU632_RS00105 0.30 -0.8 20,823 - LU632_RS00105 0.38 +0.3 20,890 + LU632_RS00105 0.43 -0.3 20,890 + LU632_RS00105 0.43 -1.1 20,890 + LU632_RS00105 0.43 -0.1 20,891 - LU632_RS00105 0.43 -0.0 20,891 - LU632_RS00105 0.43 -0.3 20,936 - LU632_RS00105 0.47 +3.4 21,100 + LU632_RS00105 0.60 -0.4 21,100 + LU632_RS00105 0.60 +1.3 21,101 - LU632_RS00105 0.60 -0.9 21,133 + LU632_RS00105 0.63 -1.4 21,134 - LU632_RS00105 0.63 -0.7 21,134 - LU632_RS00105 0.63 +0.4 21,134 - LU632_RS00105 0.63 +1.1 21,194 - LU632_RS00105 0.68 -0.1 21,194 - LU632_RS00105 0.68 +1.0 21,209 - LU632_RS00105 0.69 -0.6 21,333 - LU632_RS00105 0.79 +0.5 21,333 - LU632_RS00105 0.79 -0.7 21,434 - LU632_RS00105 0.87 +0.4 21,495 + -0.2 21,496 - +0.4 21,583 - +0.9 21,742 - LU632_RS00110 0.24 +1.2 21,742 - LU632_RS00110 0.24 -0.8 21,777 + LU632_RS00110 0.32 +0.9 21,777 + LU632_RS00110 0.32 -1.6 21,778 - LU632_RS00110 0.33 -1.4 21,929 + LU632_RS00110 0.67 -0.3 21,952 - LU632_RS00110 0.73 +0.6 21,999 + LU632_RS00110 0.83 -1.6 22,000 - LU632_RS00110 0.84 -2.3 22,000 - LU632_RS00110 0.84 +0.2 22,003 - LU632_RS00110 0.84 -0.8 22,003 - LU632_RS00110 0.84 -0.6 22,098 - +1.9 22,146 + -0.4 22,146 + +2.6 22,149 - +2.6 22,151 + -1.7 22,151 + -0.3 22,151 + +0.2 22,320 - LU632_RS00115 0.13 -1.0 22,460 + LU632_RS00115 0.27 +1.6 22,460 + LU632_RS00115 0.27 +5.1 22,460 + LU632_RS00115 0.27 +1.7 22,610 + LU632_RS00115 0.41 -3.1 22,611 - LU632_RS00115 0.41 -1.9 22,650 - LU632_RS00115 0.45 -1.1 22,650 - LU632_RS00115 0.45 +3.7 22,670 + LU632_RS00115 0.47 +4.4 22,670 + LU632_RS00115 0.47 +0.4 22,796 - LU632_RS00115 0.59 +0.6 22,814 + LU632_RS00115 0.60 +0.6 22,815 - LU632_RS00115 0.60 +1.2 22,965 - LU632_RS00115 0.75 +3.1 23,029 + LU632_RS00115 0.81 +0.8 23,029 + LU632_RS00115 0.81 +0.8 23,037 - LU632_RS00115 0.81 -1.1 23,037 - LU632_RS00115 0.81 +5.3 23,041 - LU632_RS00115 0.82 +0.2
Or see this region's nucleotide sequence