Experiment: ABB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS07850 and HMPREF1181_RS07855 are separated by 5 nucleotides HMPREF1181_RS07855 and HMPREF1181_RS07860 are separated by 48 nucleotides HMPREF1181_RS07860 and HMPREF1181_RS07865 overlap by 4 nucleotides HMPREF1181_RS07865 and HMPREF1181_RS07870 are separated by 111 nucleotides
HMPREF1181_RS07850: HMPREF1181_RS07850 - hypothetical protein, at 68,660 to 69,091
_RS07850
HMPREF1181_RS07855: HMPREF1181_RS07855 - nicotinate-nucleotide adenylyltransferase, at 69,097 to 69,663
_RS07855
HMPREF1181_RS07860: HMPREF1181_RS07860 - hypothetical protein, at 69,712 to 69,921
_RS07860
HMPREF1181_RS07865: HMPREF1181_RS07865 - guanylate kinase, at 69,918 to 70,481
_RS07865
HMPREF1181_RS07870: HMPREF1181_RS07870 - YicC family protein, at 70,593 to 71,471
_RS07870
Position (kb) 69
70 Strain fitness (log2 ratio) -2
-1
0
1 at 68.761 kb on + strand, within HMPREF1181_RS07850 at 68.913 kb on + strand, within HMPREF1181_RS07850 at 68.914 kb on - strand, within HMPREF1181_RS07850 at 68.999 kb on + strand, within HMPREF1181_RS07850 at 69.004 kb on - strand, within HMPREF1181_RS07850 at 69.047 kb on + strand, within HMPREF1181_RS07850 at 69.047 kb on + strand, within HMPREF1181_RS07850 at 69.047 kb on + strand, within HMPREF1181_RS07850 at 69.048 kb on - strand at 69.094 kb on - strand at 69.751 kb on - strand, within HMPREF1181_RS07860 at 69.859 kb on - strand, within HMPREF1181_RS07860 at 70.515 kb on - strand at 70.537 kb on - strand at 70.595 kb on - strand at 70.595 kb on - strand at 70.740 kb on - strand, within HMPREF1181_RS07870 at 70.740 kb on - strand, within HMPREF1181_RS07870 at 70.835 kb on - strand, within HMPREF1181_RS07870 at 70.838 kb on - strand, within HMPREF1181_RS07870 at 70.842 kb on - strand, within HMPREF1181_RS07870 at 70.842 kb on - strand, within HMPREF1181_RS07870
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media remove 68,761 + HMPREF1181_RS07850 0.23 -0.2 68,913 + HMPREF1181_RS07850 0.59 -0.3 68,914 - HMPREF1181_RS07850 0.59 -0.5 68,999 + HMPREF1181_RS07850 0.78 -1.3 69,004 - HMPREF1181_RS07850 0.80 -0.6 69,047 + HMPREF1181_RS07850 0.90 -0.6 69,047 + HMPREF1181_RS07850 0.90 +0.2 69,047 + HMPREF1181_RS07850 0.90 -0.1 69,048 - -0.1 69,094 - +0.5 69,751 - HMPREF1181_RS07860 0.19 +0.1 69,859 - HMPREF1181_RS07860 0.70 -1.2 70,515 - -0.6 70,537 - +0.1 70,595 - +0.3 70,595 - +1.3 70,740 - HMPREF1181_RS07870 0.17 -0.5 70,740 - HMPREF1181_RS07870 0.17 -0.6 70,835 - HMPREF1181_RS07870 0.28 -0.3 70,838 - HMPREF1181_RS07870 0.28 -0.1 70,842 - HMPREF1181_RS07870 0.28 -0.1 70,842 - HMPREF1181_RS07870 0.28 -1.8
Or see this region's nucleotide sequence