Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26005

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
10,928	-		LU632_RS26000	0.38	-0.6
10,977	+		LU632_RS26000	0.41	-1.8
10,977	+		LU632_RS26000	0.41	+0.4
10,978	-		LU632_RS26000	0.41	+2.5
10,998	+		LU632_RS26000	0.42	-2.5
10,999	-		LU632_RS26000	0.43	-3.5
10,999	-		LU632_RS26000	0.43	+2.6
11,026	+		LU632_RS26000	0.44	-0.9
11,048	+		LU632_RS26000	0.46	-1.7
11,056	+		LU632_RS26000	0.46	-3.0
11,109	+		LU632_RS26000	0.50	+3.9
11,109	+		LU632_RS26000	0.50	-1.6
11,109	+		LU632_RS26000	0.50	-0.8
11,109	+		LU632_RS26000	0.50	-0.6
11,109	+		LU632_RS26000	0.50	-1.4
11,109	+		LU632_RS26000	0.50	-1.4
11,110	-		LU632_RS26000	0.50	-1.1
11,110	-		LU632_RS26000	0.50	-1.3
11,110	-		LU632_RS26000	0.50	+1.5
11,110	-		LU632_RS26000	0.50	-0.1
11,110	-		LU632_RS26000	0.50	-0.2
11,110	-		LU632_RS26000	0.50	-1.5
11,110	-		LU632_RS26000	0.50	-0.7
11,110	-		LU632_RS26000	0.50	+3.1
11,110	-		LU632_RS26000	0.50	+0.4
11,110	-		LU632_RS26000	0.50	-1.0
11,110	-		LU632_RS26000	0.50	-0.2
11,118	-		LU632_RS26000	0.51	-3.4
11,166	+		LU632_RS26000	0.54	+5.4
11,167	-		LU632_RS26000	0.54	-2.9
11,494	+		LU632_RS26000	0.76	+2.1
11,604	+		LU632_RS26000	0.83	-2.5
11,604	+		LU632_RS26000	0.83	-1.7
11,604	+		LU632_RS26000	0.83	-0.8
11,605	-		LU632_RS26000	0.84	-0.6
11,605	-		LU632_RS26000	0.84	-3.6
11,605	-		LU632_RS26000	0.84	-3.0
11,634	+		LU632_RS26000	0.85	+1.0
11,635	-		LU632_RS26000	0.86	-1.3
11,635	-		LU632_RS26000	0.86	-0.3
11,635	-		LU632_RS26000	0.86	+0.6
11,638	-		LU632_RS26000	0.86	+0.3
11,656	-		LU632_RS26000	0.87	+1.9
11,656	-		LU632_RS26000	0.87	+0.3
11,706	+				-3.1
11,848	+				+2.1
11,848	+				-1.1
11,848	+				+0.8
11,848	+				+0.3
11,849	-				+0.9
11,849	-				-3.2
11,849	-				-0.7
11,849	-				-3.3
11,849	-				+2.6
11,852	+				+0.1
11,852	+				-0.6
11,852	+				-2.3
11,852	+				-2.1
11,852	+				+0.2
11,853	-				-1.2
11,853	-				+0.3
11,853	-				+0.2
11,853	-				-4.2
11,853	-				+0.1
11,853	-				+0.1
11,853	-				+0.2
11,853	-				-1.2
11,882	-				-2.7
11,900	+				-1.3
11,900	+				-0.1
11,904	+				-1.2
11,905	-				+1.8
11,934	+		LU632_RS26005	0.15	+0.5
11,937	+		LU632_RS26005	0.16	-1.4
11,938	-		LU632_RS26005	0.16	+0.2
11,964	+		LU632_RS26005	0.20	-1.7
11,965	-		LU632_RS26005	0.21	+1.5
12,013	-		LU632_RS26005	0.29	-1.2
12,037	-		LU632_RS26005	0.34	-2.0
12,099	-		LU632_RS26005	0.45	-0.1
12,099	-		LU632_RS26005	0.45	-1.7
12,171	+		LU632_RS26005	0.58	-1.2
12,195	+		LU632_RS26005	0.62	+0.4
12,274	+		LU632_RS26005	0.77	-0.3
12,377	+				-2.5
12,377	+				-2.5
12,434	-				-1.2
12,434	-				+0.9
12,461	+		LU632_RS26010	0.15	-1.5
12,461	+		LU632_RS26010	0.15	-1.7
12,461	+		LU632_RS26010	0.15	-2.0
12,462	-		LU632_RS26010	0.15	+2.8
12,462	-		LU632_RS26010	0.15	-2.8
12,466	+		LU632_RS26010	0.16	+0.3
12,466	+		LU632_RS26010	0.16	-0.8
12,467	-		LU632_RS26010	0.17	-0.5
12,488	+		LU632_RS26010	0.22	+2.0
12,488	+		LU632_RS26010	0.22	-0.8
12,489	-		LU632_RS26010	0.23	-0.7
12,490	+		LU632_RS26010	0.23	-2.8
12,516	-		LU632_RS26010	0.30	-1.7
12,533	+		LU632_RS26010	0.34	+0.3
12,533	+		LU632_RS26010	0.34	-0.7
12,534	-		LU632_RS26010	0.35	-0.4
12,651	+		LU632_RS26010	0.66	-0.7
12,665	+		LU632_RS26010	0.70	-0.7
12,665	+		LU632_RS26010	0.70	-2.0
12,665	+		LU632_RS26010	0.70	-2.9
12,665	+		LU632_RS26010	0.70	+0.3
12,666	-		LU632_RS26010	0.70	-0.9
12,666	-		LU632_RS26010	0.70	+2.9
12,666	-		LU632_RS26010	0.70	+2.6
12,666	-		LU632_RS26010	0.70	-0.7
12,666	-		LU632_RS26010	0.70	-3.6
12,666	-		LU632_RS26010	0.70	-1.7
12,666	-		LU632_RS26010	0.70	-2.4
12,708	+		LU632_RS26010	0.81	-3.2
12,708	+		LU632_RS26010	0.81	-0.5
12,795	+				-0.8
12,795	+				-2.4
12,796	-				-1.8
12,796	-				+1.9
12,796	-				-2.3
12,796	-				+0.7
12,796	-				+0.7
12,796	-				+2.7
12,796	-				-1.8
12,796	-				+1.3
12,796	-				-3.4
12,813	+				-1.1
13,043	+		LU632_RS26015	0.50	-2.2
13,043	+		LU632_RS26015	0.50	-1.5
13,162	+		LU632_RS26015	0.73	-2.2
13,162	+		LU632_RS26015	0.73	-0.7
13,162	+		LU632_RS26015	0.73	-0.7
13,162	+		LU632_RS26015	0.73	-1.2
13,163	-		LU632_RS26015	0.73	-1.1
13,163	-		LU632_RS26015	0.73	-1.1
13,164	+		LU632_RS26015	0.73	-1.7
13,165	-		LU632_RS26015	0.73	-1.1
13,165	-		LU632_RS26015	0.73	-1.7
13,165	-		LU632_RS26015	0.73	+5.0
13,233	-		LU632_RS26015	0.86	-0.9