Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25145 and LU632_RS25150 are separated by 9 nucleotides LU632_RS25150 and LU632_RS25155 are separated by 9 nucleotides LU632_RS25155 and LU632_RS25160 are separated by 129 nucleotides
LU632_RS25145: LU632_RS25145 - phage tail sheath subtilisin-like domain-containing protein, at 4,784,869 to 4,786,383
_RS25145
LU632_RS25150: LU632_RS25150 - phage tail tube protein, at 4,786,393 to 4,786,749
_RS25150
LU632_RS25155: LU632_RS25155 - phage tail assembly protein, at 4,786,759 to 4,787,214
_RS25155
LU632_RS25160: LU632_RS25160 - tape measure protein, at 4,787,344 to 4,789,179
_RS25160
Position (kb) 4786
4787 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4785.473 kb on - strand, within LU632_RS25145 at 4785.475 kb on + strand, within LU632_RS25145 at 4785.520 kb on + strand, within LU632_RS25145 at 4785.592 kb on + strand, within LU632_RS25145 at 4785.593 kb on - strand, within LU632_RS25145 at 4785.593 kb on - strand, within LU632_RS25145 at 4785.628 kb on - strand, within LU632_RS25145 at 4785.669 kb on + strand, within LU632_RS25145 at 4785.669 kb on + strand, within LU632_RS25145 at 4785.796 kb on + strand, within LU632_RS25145 at 4785.796 kb on + strand, within LU632_RS25145 at 4785.797 kb on - strand, within LU632_RS25145 at 4785.797 kb on - strand, within LU632_RS25145 at 4785.797 kb on - strand, within LU632_RS25145 at 4785.987 kb on - strand, within LU632_RS25145 at 4786.048 kb on + strand, within LU632_RS25145 at 4786.132 kb on - strand, within LU632_RS25145 at 4786.276 kb on + strand at 4786.277 kb on - strand at 4786.277 kb on - strand at 4786.277 kb on - strand at 4786.336 kb on - strand at 4786.429 kb on + strand, within LU632_RS25150 at 4786.429 kb on + strand, within LU632_RS25150 at 4786.430 kb on - strand, within LU632_RS25150 at 4786.430 kb on - strand, within LU632_RS25150 at 4786.527 kb on + strand, within LU632_RS25150 at 4786.527 kb on + strand, within LU632_RS25150 at 4786.528 kb on - strand, within LU632_RS25150 at 4786.740 kb on + strand at 4786.740 kb on + strand at 4786.741 kb on - strand at 4786.779 kb on + strand at 4786.782 kb on + strand at 4786.783 kb on - strand at 4786.909 kb on + strand, within LU632_RS25155 at 4786.909 kb on + strand, within LU632_RS25155 at 4786.948 kb on - strand, within LU632_RS25155 at 4787.336 kb on + strand at 4787.357 kb on + strand at 4787.484 kb on + strand at 4787.579 kb on - strand, within LU632_RS25160 at 4787.594 kb on + strand, within LU632_RS25160 at 4787.595 kb on - strand, within LU632_RS25160 at 4787.595 kb on - strand, within LU632_RS25160 at 4787.598 kb on + strand, within LU632_RS25160 at 4787.599 kb on - strand, within LU632_RS25160 at 4787.599 kb on - strand, within LU632_RS25160 at 4787.650 kb on + strand, within LU632_RS25160 at 4787.748 kb on + strand, within LU632_RS25160
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,785,473 - LU632_RS25145 0.40 +0.8 4,785,475 + LU632_RS25145 0.40 +1.0 4,785,520 + LU632_RS25145 0.43 +0.8 4,785,592 + LU632_RS25145 0.48 +1.1 4,785,593 - LU632_RS25145 0.48 -1.4 4,785,593 - LU632_RS25145 0.48 +0.4 4,785,628 - LU632_RS25145 0.50 -1.1 4,785,669 + LU632_RS25145 0.53 +0.6 4,785,669 + LU632_RS25145 0.53 -2.7 4,785,796 + LU632_RS25145 0.61 -1.5 4,785,796 + LU632_RS25145 0.61 +1.0 4,785,797 - LU632_RS25145 0.61 +1.6 4,785,797 - LU632_RS25145 0.61 +0.9 4,785,797 - LU632_RS25145 0.61 -0.0 4,785,987 - LU632_RS25145 0.74 -1.8 4,786,048 + LU632_RS25145 0.78 +3.0 4,786,132 - LU632_RS25145 0.83 +0.2 4,786,276 + -1.1 4,786,277 - +0.9 4,786,277 - +0.0 4,786,277 - -1.2 4,786,336 - -0.2 4,786,429 + LU632_RS25150 0.10 +0.3 4,786,429 + LU632_RS25150 0.10 +4.6 4,786,430 - LU632_RS25150 0.10 -0.2 4,786,430 - LU632_RS25150 0.10 -0.1 4,786,527 + LU632_RS25150 0.38 -0.8 4,786,527 + LU632_RS25150 0.38 +0.6 4,786,528 - LU632_RS25150 0.38 +0.7 4,786,740 + -0.1 4,786,740 + -0.9 4,786,741 - -0.2 4,786,779 + -2.5 4,786,782 + -0.2 4,786,783 - -0.2 4,786,909 + LU632_RS25155 0.33 -0.2 4,786,909 + LU632_RS25155 0.33 -0.0 4,786,948 - LU632_RS25155 0.41 -0.6 4,787,336 + -0.2 4,787,357 + +2.3 4,787,484 + +0.9 4,787,579 - LU632_RS25160 0.13 -1.0 4,787,594 + LU632_RS25160 0.14 -1.4 4,787,595 - LU632_RS25160 0.14 +0.5 4,787,595 - LU632_RS25160 0.14 +0.8 4,787,598 + LU632_RS25160 0.14 +1.9 4,787,599 - LU632_RS25160 0.14 +2.7 4,787,599 - LU632_RS25160 0.14 +0.1 4,787,650 + LU632_RS25160 0.17 -0.0 4,787,748 + LU632_RS25160 0.22 +0.8
Or see this region's nucleotide sequence