Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24880

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,746,585	-				+1.3
4,746,635	+				+1.0
4,746,640	+				-1.5
4,746,641	-				+2.9
4,746,742	+				+0.4
4,746,746	+				-0.3
4,746,746	+				+1.2
4,746,746	+				+0.9
4,746,749	-				+0.8
4,746,755	+				+1.6
4,746,755	+				+0.3
4,746,755	+				+0.2
4,746,765	+				-0.7
4,746,844	+				+1.8
4,746,967	+	pstS	LU632_RS24880	0.16	+0.8
4,746,968	-	pstS	LU632_RS24880	0.17	-2.0
4,747,122	+	pstS	LU632_RS24880	0.31	-2.0
4,747,180	+	pstS	LU632_RS24880	0.37	-3.1
4,747,257	+	pstS	LU632_RS24880	0.44	+2.4
4,747,312	+	pstS	LU632_RS24880	0.50	+0.8
4,747,476	+	pstS	LU632_RS24880	0.65	-0.2
4,747,626	+	pstS	LU632_RS24880	0.80	-1.5
4,747,627	-	pstS	LU632_RS24880	0.80	-3.2
4,747,711	+	pstS	LU632_RS24880	0.88	-1.2
4,747,711	+	pstS	LU632_RS24880	0.88	-1.9
4,747,713	+	pstS	LU632_RS24880	0.88	+1.8
4,747,713	+	pstS	LU632_RS24880	0.88	-0.5
4,747,714	-	pstS	LU632_RS24880	0.88	+0.8
4,747,805	+				-0.4
4,747,805	+				-0.2
4,747,805	+				+0.4
4,747,834	+				+1.2
4,747,834	+				+0.2
4,747,835	-				+0.8
4,748,152	+	pstC	LU632_RS24885	0.24	-0.2
4,748,153	-	pstC	LU632_RS24885	0.24	-0.8
4,748,204	-	pstC	LU632_RS24885	0.30	-2.5
4,748,302	+	pstC	LU632_RS24885	0.40	+1.4
4,748,343	-	pstC	LU632_RS24885	0.44	-1.5
4,748,377	+	pstC	LU632_RS24885	0.48	-0.8
4,748,378	-	pstC	LU632_RS24885	0.48	+2.4
4,748,659	+	pstC	LU632_RS24885	0.77	-2.5
4,748,659	+	pstC	LU632_RS24885	0.77	+3.1
4,748,663	-	pstC	LU632_RS24885	0.77	-0.8
4,748,720	-	pstC	LU632_RS24885	0.83	-0.2
4,748,794	+				-1.2