Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24105

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,596,493	+				-3.1
4,596,495	+				-0.7
4,596,496	-				+0.8
4,596,524	-				+0.1
4,596,527	+				-0.6
4,596,527	+				-0.6
4,596,536	-	pldA	LU632_RS24100	0.11	-1.9
4,596,537	+	pldA	LU632_RS24100	0.11	+0.1
4,596,609	+	pldA	LU632_RS24100	0.19	+0.3
4,596,610	-	pldA	LU632_RS24100	0.19	-0.9
4,596,678	+	pldA	LU632_RS24100	0.27	+0.8
4,596,679	-	pldA	LU632_RS24100	0.27	-0.2
4,596,679	-	pldA	LU632_RS24100	0.27	-1.8
4,596,679	-	pldA	LU632_RS24100	0.27	+0.9
4,596,679	-	pldA	LU632_RS24100	0.27	+1.3
4,596,706	+	pldA	LU632_RS24100	0.30	-1.2
4,596,768	-	pldA	LU632_RS24100	0.37	-2.0
4,596,772	+	pldA	LU632_RS24100	0.38	-1.8
4,596,772	+	pldA	LU632_RS24100	0.38	+0.7
4,596,984	+	pldA	LU632_RS24100	0.62	+0.8
4,596,985	-	pldA	LU632_RS24100	0.62	+1.9
4,597,006	+	pldA	LU632_RS24100	0.64	-0.1
4,597,092	+	pldA	LU632_RS24100	0.74	+1.0
4,597,093	-	pldA	LU632_RS24100	0.74	+0.9
4,597,093	-	pldA	LU632_RS24100	0.74	-0.4
4,597,112	-	pldA	LU632_RS24100	0.76	+0.2
4,597,114	+	pldA	LU632_RS24100	0.77	+1.4
4,597,114	+	pldA	LU632_RS24100	0.77	+2.0
4,597,117	+	pldA	LU632_RS24100	0.77	-0.7
4,597,117	+	pldA	LU632_RS24100	0.77	+1.4
4,597,117	+	pldA	LU632_RS24100	0.77	+3.0
4,597,144	-	pldA	LU632_RS24100	0.80	+0.3
4,597,144	-	pldA	LU632_RS24100	0.80	+0.8
4,597,249	+				-1.0
4,597,249	+				+1.8
4,597,249	+				-0.6
4,597,434	-				-0.0
4,597,479	-				-1.5
4,597,523	+				-2.8
4,597,524	-				+1.1
4,597,524	-				-0.2
4,597,524	-				+1.1
4,597,567	-		LU632_RS24105	0.16	+0.1
4,597,913	-		LU632_RS24105	0.89	-1.5
4,597,968	+				+0.2
4,597,968	+				+0.9
4,597,980	+				-2.8
4,597,980	+				+0.8
4,597,981	-				+0.4
4,597,981	-				+0.5
4,598,044	+				+2.1
4,598,045	-				+0.8
4,598,071	+				-2.4
4,598,072	-				+0.6
4,598,072	-				-0.5
4,598,076	+				+2.4
4,598,082	+				-0.6
4,598,083	-				-1.6
4,598,220	-	rarD	LU632_RS24110	0.25	+1.8
4,598,247	+	rarD	LU632_RS24110	0.28	+1.3
4,598,311	+	rarD	LU632_RS24110	0.35	-0.4
4,598,319	+	rarD	LU632_RS24110	0.36	+0.2
4,598,483	+	rarD	LU632_RS24110	0.54	+0.4
4,598,483	+	rarD	LU632_RS24110	0.54	-3.1
4,598,483	+	rarD	LU632_RS24110	0.54	-0.4
4,598,484	-	rarD	LU632_RS24110	0.54	+0.2
4,598,484	-	rarD	LU632_RS24110	0.54	-0.7
4,598,484	-	rarD	LU632_RS24110	0.54	+0.4
4,598,485	+	rarD	LU632_RS24110	0.54	+2.5
4,598,485	+	rarD	LU632_RS24110	0.54	-2.2
4,598,485	+	rarD	LU632_RS24110	0.54	+0.3
4,598,485	+	rarD	LU632_RS24110	0.54	+1.2
4,598,485	+	rarD	LU632_RS24110	0.54	-2.4
4,598,486	-	rarD	LU632_RS24110	0.54	-0.1
4,598,486	-	rarD	LU632_RS24110	0.54	-1.2
4,598,486	-	rarD	LU632_RS24110	0.54	-2.2
4,598,658	+	rarD	LU632_RS24110	0.73	-1.8
4,598,658	+	rarD	LU632_RS24110	0.73	-1.5
4,598,658	+	rarD	LU632_RS24110	0.73	-1.3
4,598,658	+	rarD	LU632_RS24110	0.73	-1.1
4,598,660	+	rarD	LU632_RS24110	0.74	+0.3
4,598,661	-	rarD	LU632_RS24110	0.74	+0.5
4,598,661	-	rarD	LU632_RS24110	0.74	+0.8
4,598,661	-	rarD	LU632_RS24110	0.74	-0.3
4,598,820	+				+1.8
4,598,820	+				-1.2
4,598,821	-				+0.6
4,598,895	-				-0.6