Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metE and metR are separated by 135 nucleotides metR and LU632_RS24040 are separated by 97 nucleotides LU632_RS24040 and LU632_RS24045 are separated by 153 nucleotides
LU632_RS24030: metE - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 4,582,133 to 4,584,403
metE
LU632_RS24035: metR - HTH-type transcriptional regulator MetR, at 4,584,539 to 4,585,462
metR
LU632_RS24040: LU632_RS24040 - DUF1456 family protein, at 4,585,560 to 4,586,045
_RS24040
LU632_RS24045: LU632_RS24045 - hypothetical protein, at 4,586,199 to 4,586,447
_RS24045
Position (kb) 4584
4585
4586 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4583.576 kb on + strand, within metE at 4583.666 kb on - strand, within metE at 4583.676 kb on + strand, within metE at 4583.677 kb on - strand, within metE at 4583.800 kb on + strand, within metE at 4583.904 kb on + strand, within metE at 4583.905 kb on - strand, within metE at 4583.905 kb on - strand, within metE at 4583.939 kb on - strand, within metE at 4583.964 kb on - strand, within metE at 4583.964 kb on - strand, within metE at 4583.964 kb on - strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.028 kb on + strand, within metE at 4584.029 kb on - strand, within metE at 4584.029 kb on - strand, within metE at 4584.029 kb on - strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.030 kb on + strand, within metE at 4584.031 kb on - strand, within metE at 4584.031 kb on - strand, within metE at 4584.031 kb on - strand, within metE at 4584.031 kb on - strand, within metE at 4584.037 kb on - strand, within metE at 4584.037 kb on - strand, within metE at 4584.056 kb on - strand, within metE at 4584.116 kb on + strand, within metE at 4584.116 kb on + strand, within metE at 4584.117 kb on - strand, within metE at 4584.121 kb on + strand, within metE at 4584.122 kb on - strand, within metE at 4584.146 kb on - strand, within metE at 4584.146 kb on - strand, within metE at 4584.386 kb on - strand at 4584.386 kb on - strand at 4584.392 kb on - strand at 4584.396 kb on - strand at 4584.474 kb on + strand at 4584.488 kb on - strand at 4584.492 kb on + strand at 4584.492 kb on + strand at 4584.493 kb on - strand at 4584.550 kb on + strand at 4584.550 kb on + strand at 4584.550 kb on + strand at 4584.551 kb on - strand at 4584.692 kb on - strand, within metR at 4584.850 kb on + strand, within metR at 4585.001 kb on + strand, within metR at 4585.027 kb on - strand, within metR at 4585.072 kb on + strand, within metR at 4585.113 kb on - strand, within metR at 4585.113 kb on - strand, within metR at 4585.183 kb on - strand, within metR at 4585.203 kb on + strand, within metR at 4585.461 kb on - strand at 4585.502 kb on - strand at 4585.512 kb on - strand at 4585.521 kb on + strand at 4585.521 kb on + strand at 4585.543 kb on + strand at 4585.560 kb on - strand at 4585.565 kb on + strand at 4585.565 kb on + strand at 4585.593 kb on + strand at 4585.593 kb on + strand at 4585.594 kb on - strand at 4585.594 kb on - strand at 4585.727 kb on + strand, within LU632_RS24040 at 4585.727 kb on + strand, within LU632_RS24040 at 4585.727 kb on + strand, within LU632_RS24040 at 4585.727 kb on + strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.728 kb on - strand, within LU632_RS24040 at 4585.805 kb on + strand, within LU632_RS24040 at 4585.806 kb on - strand, within LU632_RS24040 at 4585.883 kb on + strand, within LU632_RS24040 at 4585.883 kb on + strand, within LU632_RS24040 at 4585.904 kb on - strand, within LU632_RS24040 at 4585.927 kb on + strand, within LU632_RS24040 at 4585.978 kb on + strand, within LU632_RS24040 at 4586.009 kb on + strand at 4586.010 kb on - strand at 4586.010 kb on - strand at 4586.011 kb on + strand at 4586.011 kb on + strand at 4586.011 kb on + strand at 4586.012 kb on - strand at 4586.012 kb on - strand at 4586.025 kb on - strand at 4586.175 kb on - strand at 4586.187 kb on + strand at 4586.194 kb on + strand at 4586.194 kb on + strand at 4586.194 kb on + strand at 4586.218 kb on - strand at 4586.227 kb on + strand, within LU632_RS24045 at 4586.227 kb on + strand, within LU632_RS24045 at 4586.227 kb on + strand, within LU632_RS24045 at 4586.228 kb on - strand, within LU632_RS24045 at 4586.299 kb on - strand, within LU632_RS24045 at 4586.370 kb on + strand, within LU632_RS24045 at 4586.370 kb on + strand, within LU632_RS24045 at 4586.371 kb on - strand, within LU632_RS24045 at 4586.371 kb on - strand, within LU632_RS24045 at 4586.405 kb on + strand, within LU632_RS24045
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,583,576 + metE LU632_RS24030 0.64 +1.5 4,583,666 - metE LU632_RS24030 0.68 -3.8 4,583,676 + metE LU632_RS24030 0.68 -0.8 4,583,677 - metE LU632_RS24030 0.68 -1.1 4,583,800 + metE LU632_RS24030 0.73 +0.8 4,583,904 + metE LU632_RS24030 0.78 -0.5 4,583,905 - metE LU632_RS24030 0.78 -1.2 4,583,905 - metE LU632_RS24030 0.78 +0.8 4,583,939 - metE LU632_RS24030 0.80 +0.4 4,583,964 - metE LU632_RS24030 0.81 +0.8 4,583,964 - metE LU632_RS24030 0.81 -0.8 4,583,964 - metE LU632_RS24030 0.81 -1.0 4,584,028 + metE LU632_RS24030 0.83 -0.3 4,584,028 + metE LU632_RS24030 0.83 -1.9 4,584,028 + metE LU632_RS24030 0.83 +0.5 4,584,028 + metE LU632_RS24030 0.83 -0.8 4,584,028 + metE LU632_RS24030 0.83 +0.7 4,584,029 - metE LU632_RS24030 0.83 -1.8 4,584,029 - metE LU632_RS24030 0.83 +0.3 4,584,029 - metE LU632_RS24030 0.83 +2.3 4,584,030 + metE LU632_RS24030 0.84 -1.5 4,584,030 + metE LU632_RS24030 0.84 +0.1 4,584,030 + metE LU632_RS24030 0.84 +2.9 4,584,030 + metE LU632_RS24030 0.84 -2.4 4,584,030 + metE LU632_RS24030 0.84 -0.6 4,584,030 + metE LU632_RS24030 0.84 -2.8 4,584,031 - metE LU632_RS24030 0.84 -0.9 4,584,031 - metE LU632_RS24030 0.84 +1.6 4,584,031 - metE LU632_RS24030 0.84 -2.4 4,584,031 - metE LU632_RS24030 0.84 +3.3 4,584,037 - metE LU632_RS24030 0.84 -0.2 4,584,037 - metE LU632_RS24030 0.84 -1.5 4,584,056 - metE LU632_RS24030 0.85 -0.7 4,584,116 + metE LU632_RS24030 0.87 +1.8 4,584,116 + metE LU632_RS24030 0.87 -0.0 4,584,117 - metE LU632_RS24030 0.87 -2.2 4,584,121 + metE LU632_RS24030 0.88 +5.1 4,584,122 - metE LU632_RS24030 0.88 -2.2 4,584,146 - metE LU632_RS24030 0.89 +0.5 4,584,146 - metE LU632_RS24030 0.89 -0.1 4,584,386 - -0.3 4,584,386 - -0.3 4,584,392 - +0.8 4,584,396 - +0.6 4,584,474 + -1.4 4,584,488 - +1.0 4,584,492 + +0.8 4,584,492 + -1.8 4,584,493 - -1.1 4,584,550 + -0.2 4,584,550 + +1.1 4,584,550 + -0.8 4,584,551 - -1.2 4,584,692 - metR LU632_RS24035 0.17 -1.4 4,584,850 + metR LU632_RS24035 0.34 -1.6 4,585,001 + metR LU632_RS24035 0.50 -0.8 4,585,027 - metR LU632_RS24035 0.53 -0.7 4,585,072 + metR LU632_RS24035 0.58 -2.8 4,585,113 - metR LU632_RS24035 0.62 -0.2 4,585,113 - metR LU632_RS24035 0.62 +0.1 4,585,183 - metR LU632_RS24035 0.70 +0.4 4,585,203 + metR LU632_RS24035 0.72 -1.6 4,585,461 - -0.2 4,585,502 - -0.4 4,585,512 - +0.4 4,585,521 + +0.8 4,585,521 + -1.8 4,585,543 + +1.4 4,585,560 - -1.5 4,585,565 + -2.4 4,585,565 + -0.7 4,585,593 + +0.5 4,585,593 + +0.4 4,585,594 - -0.2 4,585,594 - -2.0 4,585,727 + LU632_RS24040 0.34 -1.4 4,585,727 + LU632_RS24040 0.34 -0.0 4,585,727 + LU632_RS24040 0.34 +0.9 4,585,727 + LU632_RS24040 0.34 -1.9 4,585,728 - LU632_RS24040 0.35 -0.2 4,585,728 - LU632_RS24040 0.35 -0.2 4,585,728 - LU632_RS24040 0.35 -1.2 4,585,728 - LU632_RS24040 0.35 +2.6 4,585,805 + LU632_RS24040 0.50 -1.2 4,585,806 - LU632_RS24040 0.51 -1.3 4,585,883 + LU632_RS24040 0.66 +0.3 4,585,883 + LU632_RS24040 0.66 -0.5 4,585,904 - LU632_RS24040 0.71 -1.1 4,585,927 + LU632_RS24040 0.76 -1.6 4,585,978 + LU632_RS24040 0.86 -0.1 4,586,009 + +0.2 4,586,010 - -0.9 4,586,010 - -2.4 4,586,011 + -1.8 4,586,011 + +3.9 4,586,011 + -1.2 4,586,012 - -0.0 4,586,012 - +1.6 4,586,025 - +0.2 4,586,175 - +0.9 4,586,187 + +0.2 4,586,194 + -0.1 4,586,194 + -1.5 4,586,194 + +0.1 4,586,218 - +0.4 4,586,227 + LU632_RS24045 0.11 -0.4 4,586,227 + LU632_RS24045 0.11 +1.4 4,586,227 + LU632_RS24045 0.11 +0.4 4,586,228 - LU632_RS24045 0.12 +1.0 4,586,299 - LU632_RS24045 0.40 +0.8 4,586,370 + LU632_RS24045 0.69 +0.8 4,586,370 + LU632_RS24045 0.69 -0.3 4,586,371 - LU632_RS24045 0.69 +1.1 4,586,371 - LU632_RS24045 0.69 +1.0 4,586,405 + LU632_RS24045 0.83 +0.6
Or see this region's nucleotide sequence