Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23980

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,571,205	+				-0.6
4,571,311	+	tatD	LU632_RS23975	0.13	-2.0
4,571,311	+	tatD	LU632_RS23975	0.13	+0.8
4,571,380	-	tatD	LU632_RS23975	0.22	-0.8
4,571,465	+	tatD	LU632_RS23975	0.33	-1.9
4,571,665	+	tatD	LU632_RS23975	0.58	+1.4
4,571,666	-	tatD	LU632_RS23975	0.58	+0.6
4,571,729	+	tatD	LU632_RS23975	0.66	+0.7
4,571,813	+	tatD	LU632_RS23975	0.77	+1.1
4,571,813	+	tatD	LU632_RS23975	0.77	-1.5
4,571,813	+	tatD	LU632_RS23975	0.77	+2.2
4,571,903	+	tatD	LU632_RS23975	0.88	+1.6
4,571,903	+	tatD	LU632_RS23975	0.88	+2.0
4,571,903	+	tatD	LU632_RS23975	0.88	-2.2
4,571,904	-	tatD	LU632_RS23975	0.88	-1.4
4,571,904	-	tatD	LU632_RS23975	0.88	-1.8
4,571,904	-	tatD	LU632_RS23975	0.88	+0.8
4,571,904	-	tatD	LU632_RS23975	0.88	+0.8
4,571,987	+				+3.4
4,571,988	-				+1.1
4,571,989	+				-2.0
4,572,062	-				+0.1
4,572,075	-				+1.3
4,572,075	-				-0.2
4,572,075	-				+0.8
4,572,126	-				+2.4
4,572,126	-				-0.5
4,572,279	+	tatC	LU632_RS23980	0.27	+0.8
4,572,280	-	tatC	LU632_RS23980	0.27	-0.3
4,572,283	+	tatC	LU632_RS23980	0.28	-1.0
4,572,283	+	tatC	LU632_RS23980	0.28	-0.9
4,572,284	-	tatC	LU632_RS23980	0.28	-3.1
4,572,284	-	tatC	LU632_RS23980	0.28	-2.1
4,572,381	+	tatC	LU632_RS23980	0.41	-0.9
4,572,489	-	tatC	LU632_RS23980	0.55	-1.3
4,572,534	-	tatC	LU632_RS23980	0.61	-1.8
4,572,657	+	tatC	LU632_RS23980	0.77	-1.6
4,572,658	-	tatC	LU632_RS23980	0.77	-2.9
4,572,658	-	tatC	LU632_RS23980	0.77	-1.0
4,572,700	-	tatC	LU632_RS23980	0.83	-1.2
4,572,726	-	tatC	LU632_RS23980	0.86	-1.2
4,572,726	-	tatC	LU632_RS23980	0.86	-3.2
4,572,759	+				-1.0
4,572,760	-				-2.0
4,572,768	+				-1.8
4,572,768	+				-0.2
4,572,959	+	tatB	LU632_RS23985	0.19	-2.2
4,573,148	+	tatB	LU632_RS23985	0.48	-2.9
4,573,194	-	tatB	LU632_RS23985	0.56	-1.4
4,573,195	+	tatB	LU632_RS23985	0.56	-2.4
4,573,196	-	tatB	LU632_RS23985	0.56	+1.0
4,573,196	-	tatB	LU632_RS23985	0.56	-0.3
4,573,196	-	tatB	LU632_RS23985	0.56	+1.5
4,573,248	-	tatB	LU632_RS23985	0.64	-0.8
4,573,320	+	tatB	LU632_RS23985	0.75	-2.0
4,573,423	-				-1.9
4,573,452	+				-0.6
4,573,471	-				-1.4
4,573,487	-				-0.8
4,573,661	+	tatA	LU632_RS23990	0.71	-3.5
4,573,662	-	tatA	LU632_RS23990	0.71	-0.3
4,573,722	-				+0.3
4,573,776	-				-0.0