Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23310

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,440,291	+	acs	LU632_RS23305	0.76	+1.6
4,440,340	-	acs	LU632_RS23305	0.79	-0.2
4,440,341	+	acs	LU632_RS23305	0.79	-1.8
4,440,341	+	acs	LU632_RS23305	0.79	+0.3
4,440,342	-	acs	LU632_RS23305	0.79	-0.2
4,440,342	-	acs	LU632_RS23305	0.79	+0.1
4,440,373	+	acs	LU632_RS23305	0.81	+0.1
4,440,671	+				+0.0
4,440,671	+				-2.2
4,440,671	+				+0.6
4,440,671	+				-0.4
4,440,671	+				-0.5
4,440,671	+				+0.5
4,440,671	+				+1.0
4,440,672	-				-0.6
4,440,672	-				-3.5
4,440,672	-				-1.8
4,440,683	+				+0.3
4,440,742	+				-0.5
4,440,745	+				-0.4
4,440,781	+				-1.2
4,440,781	+				-0.2
4,440,797	+				+0.2
4,440,801	+				-0.4
4,440,865	+				+0.2
4,440,866	-				+4.1
4,441,117	+				+0.1
4,441,175	+				-0.7
4,441,588	+	gltP	LU632_RS23310	0.26	-1.1
4,441,852	+	gltP	LU632_RS23310	0.46	-3.3
4,442,576	-				+0.5
4,442,718	+				-1.2
4,442,719	-				-0.2
4,442,735	+				-2.7
4,442,736	-				-3.5
4,442,765	+				+1.6
4,442,766	-				+5.3
4,442,794	+				-1.2
4,442,794	+				-1.5
4,442,795	-				+0.5
4,442,795	-				-1.7
4,442,860	+				+0.3
4,442,873	+				-1.0
4,442,873	+				-0.3
4,442,873	+				-1.0
4,442,874	-				+1.2
4,442,874	-				-2.5
4,442,874	-				-0.8
4,442,901	+		LU632_RS23315	0.15	+1.9
4,442,902	-		LU632_RS23315	0.16	-2.2
4,442,906	-		LU632_RS23315	0.17	-0.5
4,442,917	+		LU632_RS23315	0.19	-2.4
4,443,002	-		LU632_RS23315	0.41	-0.5
4,443,043	+		LU632_RS23315	0.51	-0.4
4,443,044	-		LU632_RS23315	0.52	-0.7
4,443,044	-		LU632_RS23315	0.52	-0.8
4,443,045	+		LU632_RS23315	0.52	+1.8
4,443,045	+		LU632_RS23315	0.52	-0.1
4,443,045	+		LU632_RS23315	0.52	+0.2
4,443,045	+		LU632_RS23315	0.52	-0.2
4,443,045	+		LU632_RS23315	0.52	+1.9
4,443,046	-		LU632_RS23315	0.52	-1.8
4,443,046	-		LU632_RS23315	0.52	-3.1
4,443,088	-		LU632_RS23315	0.63	+1.2
4,443,172	+		LU632_RS23315	0.84	+0.1
4,443,172	+		LU632_RS23315	0.84	-1.1
4,443,172	+		LU632_RS23315	0.84	-0.3
4,443,174	+		LU632_RS23315	0.85	+1.5
4,443,174	+		LU632_RS23315	0.85	+0.5
4,443,174	+		LU632_RS23315	0.85	+0.4
4,443,174	+		LU632_RS23315	0.85	-2.0
4,443,175	-		LU632_RS23315	0.85	+1.8
4,443,175	-		LU632_RS23315	0.85	-0.5
4,443,175	-		LU632_RS23315	0.85	+2.7
4,443,175	-		LU632_RS23315	0.85	-1.5
4,443,175	-		LU632_RS23315	0.85	-0.8
4,443,175	-		LU632_RS23315	0.85	-4.5
4,443,175	-		LU632_RS23315	0.85	-1.8
4,443,229	+				+1.1
4,443,229	+				+1.2
4,443,296	+				-1.4
4,443,296	+				-1.3
4,443,296	+				-0.7
4,443,297	-				+1.7
4,443,297	-				-0.1
4,443,298	+				+1.4
4,443,299	-				+0.4
4,443,299	-				+2.5
4,443,299	-				+1.2
4,443,371	+				+1.8
4,443,372	-				+0.0
4,443,537	-		LU632_RS23320	0.13	-1.5