Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23185

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,417,034	-				-1.9
4,417,044	+				+4.4
4,417,046	+				-2.7
4,417,046	+				-0.6
4,417,046	+				-0.1
4,417,047	-				-0.7
4,417,047	-				+0.8
4,417,047	-				+4.1
4,417,111	+				+0.8
4,417,112	-				+2.1
4,417,139	-				-1.2
4,417,146	-				-0.2
4,417,164	-				-2.0
4,417,207	-				-0.7
4,417,303	+		LU632_RS23175	0.10	+0.8
4,417,303	+		LU632_RS23175	0.10	+0.4
4,417,303	+		LU632_RS23175	0.10	+0.8
4,417,303	+		LU632_RS23175	0.10	+0.4
4,417,303	+		LU632_RS23175	0.10	+0.8
4,417,304	-		LU632_RS23175	0.10	+0.4
4,417,304	-		LU632_RS23175	0.10	+0.6
4,417,304	-		LU632_RS23175	0.10	-1.3
4,417,304	-		LU632_RS23175	0.10	-0.2
4,417,304	-		LU632_RS23175	0.10	+0.8
4,417,392	-		LU632_RS23175	0.43	+0.8
4,417,648	-		LU632_RS23180	0.19	+0.1
4,417,691	+		LU632_RS23180	0.66	-0.6
4,417,691	+		LU632_RS23180	0.66	-0.9
4,417,752	+				-0.6
4,417,752	+				-2.4
4,417,849	+				+1.1
4,417,862	+				+0.2
4,419,305	+				-0.6
4,419,312	+				+1.3
4,419,312	+				-1.0
4,419,326	-				-2.0
4,419,397	+				+1.0
4,419,397	+				-0.1
4,419,397	+				+0.8
4,419,672	+		LU632_RS23190	0.31	-2.2
4,419,673	-		LU632_RS23190	0.31	+2.4
4,419,673	-		LU632_RS23190	0.31	-0.1
4,419,698	-		LU632_RS23190	0.35	-1.0
4,419,848	+		LU632_RS23190	0.58	+2.5
4,419,919	-		LU632_RS23190	0.69	+0.6
4,419,923	+		LU632_RS23190	0.70	-1.2