Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23120

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,404,329	+		LU632_RS23115	0.27	-0.8
4,404,523	-		LU632_RS23115	0.42	-0.1
4,404,523	-		LU632_RS23115	0.42	-1.0
4,404,566	+		LU632_RS23115	0.45	+0.2
4,404,665	+		LU632_RS23115	0.52	+1.0
4,404,724	-		LU632_RS23115	0.57	-1.2
4,404,801	+		LU632_RS23115	0.63	+0.2
4,404,802	-		LU632_RS23115	0.63	-1.3
4,404,878	+		LU632_RS23115	0.68	+0.8
4,405,288	-				-0.8
4,405,441	+				+1.5
4,405,441	+				-0.2
4,405,441	+				-2.2
4,405,441	+				-1.6
4,405,472	+		LU632_RS23120	0.12	-0.9
4,405,472	+		LU632_RS23120	0.12	+0.5
4,405,472	+		LU632_RS23120	0.12	+0.2
4,405,472	+		LU632_RS23120	0.12	-0.5
4,405,473	-		LU632_RS23120	0.12	+0.6
4,405,528	+		LU632_RS23120	0.17	-1.8
4,405,528	+		LU632_RS23120	0.17	+1.7
4,405,529	-		LU632_RS23120	0.17	+2.1
4,405,568	-		LU632_RS23120	0.20	+0.5
4,405,780	-		LU632_RS23120	0.37	+0.2
4,405,810	+		LU632_RS23120	0.39	+0.4
4,405,810	+		LU632_RS23120	0.39	+0.9
4,405,811	-		LU632_RS23120	0.39	-2.7
4,405,822	+		LU632_RS23120	0.40	+1.0
4,405,822	+		LU632_RS23120	0.40	+0.5
4,405,823	-		LU632_RS23120	0.40	+1.2
4,405,858	+		LU632_RS23120	0.43	+0.8
4,405,859	-		LU632_RS23120	0.43	-1.8
4,405,859	-		LU632_RS23120	0.43	-0.5
4,405,999	-		LU632_RS23120	0.54	-0.1
4,406,062	-		LU632_RS23120	0.59	+0.2
4,406,062	-		LU632_RS23120	0.59	-1.1
4,406,062	-		LU632_RS23120	0.59	+1.6
4,406,211	+		LU632_RS23120	0.71	+0.9
4,406,211	+		LU632_RS23120	0.71	-0.1
4,406,212	-		LU632_RS23120	0.71	+2.1
4,406,225	-		LU632_RS23120	0.72	+1.4
4,406,252	-		LU632_RS23120	0.74	+2.0
4,406,254	+		LU632_RS23120	0.74	-0.2
4,406,255	-		LU632_RS23120	0.75	-0.3
4,406,274	+		LU632_RS23120	0.76	-0.5
4,406,347	-		LU632_RS23120	0.82	-1.2
4,406,347	-		LU632_RS23120	0.82	-1.2
4,406,394	+		LU632_RS23120	0.86	+0.5
4,406,394	+		LU632_RS23120	0.86	-1.7
4,406,395	-		LU632_RS23120	0.86	+1.7
4,406,409	-		LU632_RS23120	0.87	+0.5
4,406,509	+				-0.1
4,406,510	-				-0.8
4,406,545	-				+2.1
4,406,545	-				+0.8
4,406,547	-				-2.7
4,406,713	+				-1.7
4,406,714	-				-0.2
4,406,865	-		LU632_RS23125	0.12	+0.7
4,406,877	+		LU632_RS23125	0.13	+0.8
4,406,878	-		LU632_RS23125	0.13	-0.2
4,406,963	+		LU632_RS23125	0.17	+0.2
4,406,964	-		LU632_RS23125	0.17	+0.2
4,406,964	-		LU632_RS23125	0.17	+1.1
4,406,964	-		LU632_RS23125	0.17	-1.2
4,407,172	+		LU632_RS23125	0.26	-2.4
4,407,174	+		LU632_RS23125	0.26	-0.8
4,407,258	-		LU632_RS23125	0.30	-1.5
4,407,459	+		LU632_RS23125	0.40	-0.7
4,407,460	-		LU632_RS23125	0.40	+0.7
4,407,460	-		LU632_RS23125	0.40	-0.2
4,407,479	+		LU632_RS23125	0.41	+1.3
4,407,525	-		LU632_RS23125	0.43	-3.1
4,407,525	-		LU632_RS23125	0.43	-0.3
4,407,558	+		LU632_RS23125	0.44	-1.0
4,407,558	+		LU632_RS23125	0.44	+1.0
4,407,558	+		LU632_RS23125	0.44	+0.3
4,407,558	+		LU632_RS23125	0.44	-1.1
4,407,558	+		LU632_RS23125	0.44	+0.8
4,407,560	+		LU632_RS23125	0.44	+0.4
4,407,560	+		LU632_RS23125	0.44	+0.6
4,407,560	+		LU632_RS23125	0.44	-1.8
4,407,560	+		LU632_RS23125	0.44	-1.2
4,407,561	-		LU632_RS23125	0.44	+3.1
4,407,561	-		LU632_RS23125	0.44	-0.2
4,407,561	-		LU632_RS23125	0.44	-0.2
4,407,561	-		LU632_RS23125	0.44	+1.1
4,407,561	-		LU632_RS23125	0.44	-2.4
4,407,561	-		LU632_RS23125	0.44	-0.3
4,407,562	+		LU632_RS23125	0.44	-1.8
4,407,562	+		LU632_RS23125	0.44	-1.5
4,407,562	+		LU632_RS23125	0.44	+1.4
4,407,562	+		LU632_RS23125	0.44	-0.2
4,407,562	+		LU632_RS23125	0.44	+0.4
4,407,562	+		LU632_RS23125	0.44	-1.5
4,407,563	-		LU632_RS23125	0.45	+0.2
4,407,563	-		LU632_RS23125	0.45	+0.4
4,407,563	-		LU632_RS23125	0.45	-0.2
4,407,563	-		LU632_RS23125	0.45	-0.9
4,407,563	-		LU632_RS23125	0.45	-1.2
4,407,563	-		LU632_RS23125	0.45	+0.0
4,407,564	+		LU632_RS23125	0.45	-1.8
4,407,564	+		LU632_RS23125	0.45	+2.6
4,407,564	+		LU632_RS23125	0.45	-0.8
4,407,564	+		LU632_RS23125	0.45	-0.3
4,407,564	+		LU632_RS23125	0.45	-0.3
4,407,564	+		LU632_RS23125	0.45	-0.2
4,407,564	+		LU632_RS23125	0.45	-0.8
4,407,565	+		LU632_RS23125	0.45	-3.3