Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23080 and LU632_RS23085 are separated by 734 nucleotides LU632_RS23085 and LU632_RS23090 are separated by 8 nucleotides LU632_RS23090 and LU632_RS23095 are separated by 74 nucleotides LU632_RS23095 and ggt are separated by 69 nucleotides
LU632_RS23080: LU632_RS23080 - hypothetical protein, at 4,396,940 to 4,397,254
_RS23080
LU632_RS23085: LU632_RS23085 - DUF5993 family protein, at 4,397,989 to 4,398,141
_RS23085
LU632_RS23090: LU632_RS23090 - disulfide bond formation protein B, at 4,398,150 to 4,398,701
_RS23090
LU632_RS23095: LU632_RS23095 - phytochelatin synthase family protein, at 4,398,776 to 4,399,555
_RS23095
LU632_RS23100: ggt - gamma-glutamyltransferase, at 4,399,625 to 4,401,388
ggt
Position (kb) 4398
4399 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4397.553 kb on + strand at 4397.653 kb on + strand at 4397.701 kb on - strand at 4397.769 kb on + strand at 4397.783 kb on + strand at 4397.949 kb on + strand at 4397.949 kb on + strand at 4397.950 kb on - strand at 4397.950 kb on - strand at 4397.980 kb on + strand at 4397.980 kb on + strand at 4397.981 kb on - strand at 4397.981 kb on - strand at 4397.981 kb on - strand at 4397.992 kb on + strand at 4397.992 kb on + strand at 4397.992 kb on + strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4398.059 kb on - strand, within LU632_RS23085 at 4398.107 kb on - strand, within LU632_RS23085 at 4398.107 kb on - strand, within LU632_RS23085 at 4398.209 kb on - strand, within LU632_RS23090 at 4398.438 kb on - strand, within LU632_RS23090 at 4398.475 kb on - strand, within LU632_RS23090 at 4398.475 kb on - strand, within LU632_RS23090 at 4398.476 kb on + strand, within LU632_RS23090 at 4398.477 kb on - strand, within LU632_RS23090 at 4398.488 kb on + strand, within LU632_RS23090 at 4398.507 kb on - strand, within LU632_RS23090 at 4398.536 kb on + strand, within LU632_RS23090 at 4398.537 kb on - strand, within LU632_RS23090 at 4398.727 kb on - strand at 4398.748 kb on + strand at 4398.787 kb on - strand at 4398.829 kb on - strand at 4398.947 kb on - strand, within LU632_RS23095 at 4399.059 kb on - strand, within LU632_RS23095 at 4399.059 kb on - strand, within LU632_RS23095 at 4399.102 kb on + strand, within LU632_RS23095 at 4399.102 kb on + strand, within LU632_RS23095 at 4399.103 kb on - strand, within LU632_RS23095 at 4399.124 kb on + strand, within LU632_RS23095 at 4399.124 kb on + strand, within LU632_RS23095 at 4399.125 kb on - strand, within LU632_RS23095 at 4399.132 kb on + strand, within LU632_RS23095 at 4399.297 kb on + strand, within LU632_RS23095 at 4399.484 kb on - strand at 4399.495 kb on + strand at 4399.496 kb on - strand at 4399.574 kb on + strand at 4399.603 kb on + strand at 4399.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,397,553 + +0.6 4,397,653 + -2.0 4,397,701 - +0.4 4,397,769 + -2.4 4,397,783 + +0.8 4,397,949 + -0.6 4,397,949 + +1.6 4,397,950 - +1.8 4,397,950 - -1.7 4,397,980 + -0.1 4,397,980 + -0.8 4,397,981 - +0.5 4,397,981 - +0.3 4,397,981 - +1.1 4,397,992 + -0.5 4,397,992 + +0.6 4,397,992 + -2.0 4,397,993 - -0.5 4,397,993 - +0.5 4,397,993 - -1.1 4,397,993 - +0.5 4,397,993 - -0.8 4,398,059 - LU632_RS23085 0.46 -0.4 4,398,107 - LU632_RS23085 0.77 -2.2 4,398,107 - LU632_RS23085 0.77 +1.0 4,398,209 - LU632_RS23090 0.11 -1.2 4,398,438 - LU632_RS23090 0.52 -0.1 4,398,475 - LU632_RS23090 0.59 +0.7 4,398,475 - LU632_RS23090 0.59 +0.8 4,398,476 + LU632_RS23090 0.59 +1.3 4,398,477 - LU632_RS23090 0.59 -1.1 4,398,488 + LU632_RS23090 0.61 -3.9 4,398,507 - LU632_RS23090 0.65 -0.6 4,398,536 + LU632_RS23090 0.70 -0.6 4,398,537 - LU632_RS23090 0.70 +0.8 4,398,727 - -1.5 4,398,748 + +1.0 4,398,787 - -1.6 4,398,829 - -0.2 4,398,947 - LU632_RS23095 0.22 -1.8 4,399,059 - LU632_RS23095 0.36 +0.0 4,399,059 - LU632_RS23095 0.36 +0.9 4,399,102 + LU632_RS23095 0.42 +0.4 4,399,102 + LU632_RS23095 0.42 +0.9 4,399,103 - LU632_RS23095 0.42 -2.8 4,399,124 + LU632_RS23095 0.45 -1.7 4,399,124 + LU632_RS23095 0.45 -0.1 4,399,125 - LU632_RS23095 0.45 -1.7 4,399,132 + LU632_RS23095 0.46 -1.3 4,399,297 + LU632_RS23095 0.67 +2.4 4,399,484 - +0.8 4,399,495 + +0.8 4,399,496 - +2.1 4,399,574 + -2.4 4,399,603 + +0.6 4,399,620 - -1.5
Or see this region's nucleotide sequence