Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23015

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,384,295	+				+0.0
4,384,295	+				-0.4
4,384,481	+	glpG	LU632_RS23010	0.13	+1.4
4,384,482	-	glpG	LU632_RS23010	0.13	+2.4
4,384,589	+	glpG	LU632_RS23010	0.26	-0.7
4,384,743	+	glpG	LU632_RS23010	0.45	-0.5
4,384,943	-	glpG	LU632_RS23010	0.69	-1.8
4,385,043	+	glpG	LU632_RS23010	0.81	-0.2
4,385,043	+	glpG	LU632_RS23010	0.81	-1.5
4,385,043	+	glpG	LU632_RS23010	0.81	+0.2
4,385,044	-	glpG	LU632_RS23010	0.81	-2.0
4,385,044	-	glpG	LU632_RS23010	0.81	+0.8
4,385,044	-	glpG	LU632_RS23010	0.81	-0.9
4,385,044	-	glpG	LU632_RS23010	0.81	-0.2
4,385,097	-	glpG	LU632_RS23010	0.88	+0.3
4,385,114	-	glpG	LU632_RS23010	0.90	+0.6
4,385,145	-				-1.8
4,385,235	+				-0.2
4,385,235	+				+0.8
4,385,236	-				+0.2
4,385,236	-				-0.2
4,385,237	+				+0.7
4,385,237	+				+0.8
4,385,237	+				+1.1
4,385,237	+				-1.5
4,385,237	+				+0.2
4,385,238	-				+3.3
4,385,331	+	glpE	LU632_RS23015	0.20	-1.2
4,385,336	+	glpE	LU632_RS23015	0.21	-3.0
4,385,336	+	glpE	LU632_RS23015	0.21	-2.5
4,385,337	-	glpE	LU632_RS23015	0.22	-0.8
4,385,366	+	glpE	LU632_RS23015	0.30	-0.2
4,385,367	-	glpE	LU632_RS23015	0.31	-1.1
4,385,400	-	glpE	LU632_RS23015	0.41	+2.2
4,385,422	-	glpE	LU632_RS23015	0.47	-2.7
4,385,443	-	glpE	LU632_RS23015	0.54	-1.7
4,385,521	-	glpE	LU632_RS23015	0.77	-1.8
4,385,577	+				-2.0
4,385,577	+				-2.0
4,385,577	+				+1.5
4,385,578	-				+1.7
4,385,715	-				+0.9