Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22810

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,341,914	+		LU632_RS22805	0.55	-0.6
4,341,915	-		LU632_RS22805	0.55	+0.5
4,341,968	-		LU632_RS22805	0.58	+0.8
4,342,101	+		LU632_RS22805	0.64	+0.5
4,342,102	-		LU632_RS22805	0.64	+0.2
4,342,105	+		LU632_RS22805	0.65	+0.8
4,342,105	+		LU632_RS22805	0.65	+1.1
4,342,116	-		LU632_RS22805	0.65	+1.0
4,342,116	-		LU632_RS22805	0.65	-1.2
4,342,166	-		LU632_RS22805	0.68	-1.9
4,342,327	+		LU632_RS22805	0.75	+1.3
4,342,327	+		LU632_RS22805	0.75	+0.9
4,342,384	+		LU632_RS22805	0.78	+4.5
4,342,413	+		LU632_RS22805	0.79	-1.2
4,342,413	+		LU632_RS22805	0.79	-1.1
4,342,413	+		LU632_RS22805	0.79	-0.2
4,342,413	+		LU632_RS22805	0.79	-0.2
4,342,413	+		LU632_RS22805	0.79	+0.0
4,342,414	-		LU632_RS22805	0.80	+0.9
4,342,414	-		LU632_RS22805	0.80	+1.3
4,342,414	-		LU632_RS22805	0.80	-0.1
4,342,414	-		LU632_RS22805	0.80	-0.2
4,342,414	-		LU632_RS22805	0.80	-1.5
4,342,425	+		LU632_RS22805	0.80	-1.4
4,342,482	+		LU632_RS22805	0.83	+0.5
4,342,512	+		LU632_RS22805	0.84	-1.4
4,342,524	+		LU632_RS22805	0.85	-0.1
4,342,524	+		LU632_RS22805	0.85	+1.5
4,342,525	-		LU632_RS22805	0.85	+0.8
4,342,527	+		LU632_RS22805	0.85	-1.0
4,342,528	-		LU632_RS22805	0.85	-0.3
4,342,539	+		LU632_RS22805	0.86	-0.5
4,342,540	-		LU632_RS22805	0.86	+0.5
4,342,560	+		LU632_RS22805	0.87	-0.6
4,342,560	+		LU632_RS22805	0.87	-0.4
4,342,560	+		LU632_RS22805	0.87	-2.2
4,342,560	+		LU632_RS22805	0.87	+2.1
4,342,561	-		LU632_RS22805	0.87	+0.3
4,342,669	-				-1.5
4,342,724	+				+0.9
4,342,725	-				+0.8
4,342,725	-				+1.1
4,342,725	-				-1.5
4,342,809	-				+0.8
4,342,924	+				-2.5
4,342,924	+				-0.8
4,342,981	+				+1.5
4,342,985	+				-2.0
4,342,986	-				+2.4
4,343,014	+		LU632_RS22810	0.12	-1.0
4,343,020	+		LU632_RS22810	0.12	-1.8
4,343,021	-		LU632_RS22810	0.13	-0.1
4,343,116	+		LU632_RS22810	0.20	-1.5
4,343,117	-		LU632_RS22810	0.20	-0.6
4,343,165	+		LU632_RS22810	0.24	-1.2
4,343,166	-		LU632_RS22810	0.24	-1.7
4,343,168	+		LU632_RS22810	0.25	-0.5
4,343,168	+		LU632_RS22810	0.25	-1.1
4,343,169	-		LU632_RS22810	0.25	-0.7
4,343,235	+		LU632_RS22810	0.30	-2.9
4,343,235	+		LU632_RS22810	0.30	-0.2
4,343,249	+		LU632_RS22810	0.31	-1.1
4,343,249	+		LU632_RS22810	0.31	-1.0
4,343,250	-		LU632_RS22810	0.31	-0.8
4,343,250	-		LU632_RS22810	0.31	-1.8
4,343,359	-		LU632_RS22810	0.40	+0.8
4,343,405	+		LU632_RS22810	0.44	-1.6
4,343,405	+		LU632_RS22810	0.44	-0.8
4,343,464	+		LU632_RS22810	0.49	-0.9
4,343,465	-		LU632_RS22810	0.49	-2.2
4,343,543	+		LU632_RS22810	0.55	-0.2
4,343,566	+		LU632_RS22810	0.57	-2.5
4,343,570	-		LU632_RS22810	0.57	-1.5
4,343,588	-		LU632_RS22810	0.59	+0.8
4,343,725	-		LU632_RS22810	0.70	-1.8
4,343,957	-		LU632_RS22810	0.89	+0.0
4,343,959	-		LU632_RS22810	0.89	-1.3
4,344,040	+				-1.5
4,344,160	+				-2.9
4,344,161	-				-3.9
4,344,184	+				-1.5
4,344,242	+		LU632_RS22815	0.12	-1.8
4,344,726	+				+1.9
4,344,727	-				+0.4
4,344,727	-				-1.7
4,344,776	+				+0.6
4,344,835	-				+1.0
4,344,965	-	ppiA	LU632_RS22820	0.20	-0.2
4,345,084	+	ppiA	LU632_RS22820	0.41	-0.2
4,345,084	+	ppiA	LU632_RS22820	0.41	+1.3