Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22410

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,280,912	-				+2.2
4,280,913	+				-1.2
4,280,913	+				+0.8
4,280,913	+				+0.0
4,280,914	-				-1.7
4,281,013	-				+4.6
4,281,030	+				+0.0
4,281,030	+				-1.9
4,281,030	+				+0.4
4,281,031	-				-2.2
4,281,031	-				-0.5
4,281,034	+				+0.4
4,281,047	+				+0.8
4,281,067	-				-0.8
4,281,083	+				+1.2
4,281,083	+				+1.4
4,281,148	-				-0.0
4,281,177	+				-1.5
4,281,250	-				-1.2
4,281,340	-				-0.2
4,281,341	+				+1.5
4,281,342	-				-0.8
4,281,352	+				-2.4
4,281,361	+				-0.1
4,281,362	-				-1.0
4,281,363	+				+1.8
4,281,420	+				+1.9
4,281,446	+				-0.0
4,281,446	+				-0.8
4,281,475	-				-1.1
4,281,503	+				-0.1
4,281,504	-				+0.4
4,281,560	+				-1.2
4,281,561	-				-0.0
4,281,569	+				+4.4
4,281,570	-				-1.8
4,281,582	+				-0.2
4,281,601	+				+5.4
4,281,601	+				+0.7
4,281,601	+				+0.8
4,281,602	-				+4.3
4,281,636	+				+0.1
4,281,637	-				-1.1
4,281,637	-				+0.6
4,281,724	-	metA	LU632_RS22410	0.15	-0.0
4,281,728	-	metA	LU632_RS22410	0.16	-0.9
4,281,728	-	metA	LU632_RS22410	0.16	-1.4
4,281,771	+	metA	LU632_RS22410	0.20	-2.7
4,281,772	-	metA	LU632_RS22410	0.21	-1.7
4,281,852	+	metA	LU632_RS22410	0.29	-1.4
4,281,897	+	metA	LU632_RS22410	0.34	-1.3
4,281,898	-	metA	LU632_RS22410	0.34	-0.9
4,282,009	-	metA	LU632_RS22410	0.46	-0.6
4,282,105	+	metA	LU632_RS22410	0.56	-2.7
4,282,106	-	metA	LU632_RS22410	0.56	-0.6
4,282,106	-	metA	LU632_RS22410	0.56	-1.3
4,282,128	-	metA	LU632_RS22410	0.59	-2.4
4,282,128	-	metA	LU632_RS22410	0.59	-1.3
4,282,130	+	metA	LU632_RS22410	0.59	+1.8
4,282,165	+	metA	LU632_RS22410	0.63	-0.3
4,282,196	+	metA	LU632_RS22410	0.66	-0.5
4,282,216	+	metA	LU632_RS22410	0.68	+0.0
4,282,216	+	metA	LU632_RS22410	0.68	-1.5
4,282,216	+	metA	LU632_RS22410	0.68	-1.0
4,282,217	-	metA	LU632_RS22410	0.68	-2.4
4,282,229	-	metA	LU632_RS22410	0.70	+0.2
4,282,252	+	metA	LU632_RS22410	0.72	-0.0
4,282,273	+	metA	LU632_RS22410	0.74	-1.8
4,282,276	+	metA	LU632_RS22410	0.75	+0.8
4,282,296	-	metA	LU632_RS22410	0.77	-0.8
4,282,296	-	metA	LU632_RS22410	0.77	-1.5
4,282,333	-	metA	LU632_RS22410	0.81	+0.8
4,282,511	-				-1.1
4,282,690	+				+1.3
4,282,708	+				-0.9
4,282,778	-				+0.5
4,282,797	+				-0.4
4,282,798	-				+0.3
4,282,833	+				+1.1
4,282,914	+				+1.3
4,282,915	-				+0.4
4,282,916	+				+0.1
4,282,918	+				+1.8
4,282,918	+				-1.2
4,282,918	+				+0.1
4,282,918	+				+0.4
4,282,918	+				+0.7
4,282,919	-				+1.8
4,282,919	-				-1.3
4,282,919	-				-1.8
4,282,920	+				+0.0
4,282,920	+				-0.1
4,282,921	-				+3.8
4,283,346	-				-0.6