Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22340

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,265,681	-	ubiC	LU632_RS22335	0.33	-0.9
4,265,704	-	ubiC	LU632_RS22335	0.37	-1.0
4,265,757	-	ubiC	LU632_RS22335	0.47	+0.1
4,265,797	-	ubiC	LU632_RS22335	0.55	+0.2
4,265,797	-	ubiC	LU632_RS22335	0.55	-0.1
4,265,797	-	ubiC	LU632_RS22335	0.55	-0.4
4,266,010	-				-2.0
4,266,071	+				-2.0
4,266,160	-				-0.2
4,266,178	+				+2.2
4,266,178	+				+1.2
4,266,218	+	psiE	LU632_RS22340	0.10	-0.5
4,266,377	+	psiE	LU632_RS22340	0.50	-1.5
4,266,414	+	psiE	LU632_RS22340	0.59	+0.0
4,266,424	+	psiE	LU632_RS22340	0.62	+1.3
4,266,424	+	psiE	LU632_RS22340	0.62	-3.1
4,266,450	-	psiE	LU632_RS22340	0.68	-2.7
4,266,453	+	psiE	LU632_RS22340	0.69	-1.2
4,266,454	-	psiE	LU632_RS22340	0.69	-0.8
4,266,464	-	psiE	LU632_RS22340	0.72	+0.1
4,266,473	+	psiE	LU632_RS22340	0.74	-1.2
4,266,492	+	psiE	LU632_RS22340	0.79	-1.5
4,266,492	+	psiE	LU632_RS22340	0.79	-2.3
4,266,543	+				+0.7
4,266,575	+				+1.4
4,266,576	-				-0.2
4,266,608	+				-3.0
4,266,608	+				-0.1
4,266,608	+				+0.8
4,266,609	-				+0.6
4,266,609	-				+0.4
4,266,625	-				-2.5
4,266,629	+				-1.8
4,266,761	+				+3.4
4,266,762	-				+3.5
4,266,762	-				-0.2
4,266,762	-				+1.0
4,266,766	+				+0.0
4,266,767	-				-0.7
4,266,767	-				-0.1
4,266,775	+				+0.8
4,266,896	+				+1.2
4,266,985	-		LU632_RS22345	0.12	-1.6
4,267,018	+		LU632_RS22345	0.14	+0.6
4,267,019	-		LU632_RS22345	0.14	+0.1
4,267,038	-		LU632_RS22345	0.15	+2.4
4,267,038	-		LU632_RS22345	0.15	+0.8
4,267,106	-		LU632_RS22345	0.18	-0.1
4,267,106	-		LU632_RS22345	0.18	+1.3
4,267,106	-		LU632_RS22345	0.18	+2.4
4,267,124	+		LU632_RS22345	0.19	-1.1
4,267,124	+		LU632_RS22345	0.19	+0.1
4,267,124	+		LU632_RS22345	0.19	+0.5
4,267,125	-		LU632_RS22345	0.19	+0.1
4,267,151	-		LU632_RS22345	0.20	+0.8
4,267,154	+		LU632_RS22345	0.20	-0.0
4,267,195	+		LU632_RS22345	0.22	+0.3
4,267,196	-		LU632_RS22345	0.22	+0.4
4,267,200	+		LU632_RS22345	0.22	-1.8
4,267,200	+		LU632_RS22345	0.22	-1.2
4,267,201	-		LU632_RS22345	0.23	+0.1
4,267,201	-		LU632_RS22345	0.23	-0.8
4,267,212	+		LU632_RS22345	0.23	+0.9
4,267,222	+		LU632_RS22345	0.24	-1.6
4,267,222	+		LU632_RS22345	0.24	+0.8
4,267,223	-		LU632_RS22345	0.24	+1.8
4,267,276	+		LU632_RS22345	0.26	-0.9
4,267,276	+		LU632_RS22345	0.26	-1.2
4,267,283	+		LU632_RS22345	0.26	+1.5
4,267,284	-		LU632_RS22345	0.26	+0.8
4,267,284	-		LU632_RS22345	0.26	+2.4
4,267,285	+		LU632_RS22345	0.27	+0.4
4,267,285	+		LU632_RS22345	0.27	+3.9
4,267,285	+		LU632_RS22345	0.27	+1.0
4,267,285	+		LU632_RS22345	0.27	-2.0
4,267,285	+		LU632_RS22345	0.27	-1.7
4,267,285	+		LU632_RS22345	0.27	+2.3
4,267,286	-		LU632_RS22345	0.27	+1.8
4,267,310	-		LU632_RS22345	0.28	+1.1
4,267,384	+		LU632_RS22345	0.31	-1.2
4,267,385	-		LU632_RS22345	0.31	-0.5
4,267,399	+		LU632_RS22345	0.32	+1.0
4,267,400	-		LU632_RS22345	0.32	+2.6
4,267,422	+		LU632_RS22345	0.33	+0.8
4,267,423	-		LU632_RS22345	0.33	-2.4
4,267,546	+		LU632_RS22345	0.39	-1.8
4,267,547	-		LU632_RS22345	0.39	+0.8