Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22280 and LU632_RS22285 are separated by 156 nucleotides LU632_RS22285 and LU632_RS22290 are separated by 111 nucleotides
LU632_RS22280: LU632_RS22280 - Rpn family recombination-promoting nuclease/putative transposase, at 4,256,443 to 4,257,129
_RS22280
LU632_RS22285: LU632_RS22285 - recombinase family protein, at 4,257,286 to 4,257,819
_RS22285
LU632_RS22290: LU632_RS22290 - tyrosine-type recombinase/integrase, at 4,257,931 to 4,258,653
_RS22290
Position (kb) 4257
4258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4256.408 kb on + strand at 4256.416 kb on - strand at 4256.419 kb on + strand at 4256.439 kb on - strand at 4256.439 kb on - strand at 4256.559 kb on - strand, within LU632_RS22280 at 4256.769 kb on + strand, within LU632_RS22280 at 4256.769 kb on + strand, within LU632_RS22280 at 4256.769 kb on + strand, within LU632_RS22280 at 4256.770 kb on - strand, within LU632_RS22280 at 4256.931 kb on + strand, within LU632_RS22280 at 4256.932 kb on - strand, within LU632_RS22280 at 4256.932 kb on - strand, within LU632_RS22280 at 4256.933 kb on + strand, within LU632_RS22280 at 4256.933 kb on + strand, within LU632_RS22280 at 4256.933 kb on + strand, within LU632_RS22280 at 4256.934 kb on - strand, within LU632_RS22280 at 4256.934 kb on - strand, within LU632_RS22280 at 4256.939 kb on + strand, within LU632_RS22280 at 4256.940 kb on - strand, within LU632_RS22280 at 4257.178 kb on - strand at 4257.196 kb on - strand at 4257.215 kb on + strand at 4257.218 kb on + strand at 4257.218 kb on + strand at 4257.240 kb on + strand at 4257.287 kb on + strand at 4257.288 kb on - strand at 4257.486 kb on - strand, within LU632_RS22285 at 4257.546 kb on - strand, within LU632_RS22285 at 4257.830 kb on + strand at 4257.831 kb on - strand at 4257.835 kb on - strand at 4257.913 kb on + strand at 4257.914 kb on - strand at 4257.917 kb on + strand at 4257.918 kb on - strand at 4257.918 kb on - strand at 4257.938 kb on + strand at 4258.100 kb on + strand, within LU632_RS22290 at 4258.105 kb on + strand, within LU632_RS22290 at 4258.105 kb on + strand, within LU632_RS22290 at 4258.106 kb on - strand, within LU632_RS22290 at 4258.109 kb on + strand, within LU632_RS22290 at 4258.159 kb on + strand, within LU632_RS22290 at 4258.225 kb on - strand, within LU632_RS22290 at 4258.461 kb on + strand, within LU632_RS22290 at 4258.461 kb on + strand, within LU632_RS22290 at 4258.461 kb on + strand, within LU632_RS22290 at 4258.462 kb on - strand, within LU632_RS22290 at 4258.462 kb on - strand, within LU632_RS22290 at 4258.656 kb on - strand at 4258.668 kb on - strand at 4258.668 kb on - strand at 4258.670 kb on - strand at 4258.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,256,408 + +0.8 4,256,416 - +1.2 4,256,419 + +1.5 4,256,439 - +1.2 4,256,439 - -0.5 4,256,559 - LU632_RS22280 0.17 +1.9 4,256,769 + LU632_RS22280 0.47 +1.1 4,256,769 + LU632_RS22280 0.47 +0.8 4,256,769 + LU632_RS22280 0.47 +0.6 4,256,770 - LU632_RS22280 0.48 +1.0 4,256,931 + LU632_RS22280 0.71 +3.2 4,256,932 - LU632_RS22280 0.71 +0.6 4,256,932 - LU632_RS22280 0.71 -0.8 4,256,933 + LU632_RS22280 0.71 +1.3 4,256,933 + LU632_RS22280 0.71 -0.6 4,256,933 + LU632_RS22280 0.71 +2.2 4,256,934 - LU632_RS22280 0.71 +0.8 4,256,934 - LU632_RS22280 0.71 -2.2 4,256,939 + LU632_RS22280 0.72 -1.2 4,256,940 - LU632_RS22280 0.72 +1.8 4,257,178 - +0.3 4,257,196 - +2.3 4,257,215 + -2.4 4,257,218 + +0.2 4,257,218 + +1.7 4,257,240 + -1.6 4,257,287 + -0.8 4,257,288 - -0.2 4,257,486 - LU632_RS22285 0.37 -2.1 4,257,546 - LU632_RS22285 0.49 +0.0 4,257,830 + +1.4 4,257,831 - -0.4 4,257,835 - +0.7 4,257,913 + -0.2 4,257,914 - -0.8 4,257,917 + +0.3 4,257,918 - -1.2 4,257,918 - +1.8 4,257,938 + +0.7 4,258,100 + LU632_RS22290 0.23 +1.4 4,258,105 + LU632_RS22290 0.24 -1.1 4,258,105 + LU632_RS22290 0.24 +2.0 4,258,106 - LU632_RS22290 0.24 +0.5 4,258,109 + LU632_RS22290 0.25 -1.0 4,258,159 + LU632_RS22290 0.32 -1.2 4,258,225 - LU632_RS22290 0.41 +0.2 4,258,461 + LU632_RS22290 0.73 +0.2 4,258,461 + LU632_RS22290 0.73 -0.3 4,258,461 + LU632_RS22290 0.73 -0.2 4,258,462 - LU632_RS22290 0.73 +0.8 4,258,462 - LU632_RS22290 0.73 -0.1 4,258,656 - +0.4 4,258,668 - -2.8 4,258,668 - -0.3 4,258,670 - -0.2 4,258,794 + +2.7
Or see this region's nucleotide sequence