Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22150

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,231,540	-				+2.2
4,231,639	-				-1.9
4,231,639	-				-0.0
4,231,787	+				+0.4
4,231,787	+				-1.4
4,231,787	+				-0.8
4,231,794	-				-0.2
4,231,837	+				-2.5
4,231,889	-				+0.7
4,231,925	+				+0.8
4,231,926	-				+1.0
4,231,930	+				-1.4
4,232,452	+	typA	LU632_RS22150	0.27	+0.8
4,232,452	+	typA	LU632_RS22150	0.27	-1.5
4,232,611	+	typA	LU632_RS22150	0.36	-1.8
4,232,612	-	typA	LU632_RS22150	0.36	-0.8
4,232,612	-	typA	LU632_RS22150	0.36	-1.5
4,232,886	+	typA	LU632_RS22150	0.51	+0.8
4,233,068	+	typA	LU632_RS22150	0.61	+2.4
4,233,358	+	typA	LU632_RS22150	0.76	-1.2
4,233,531	+	typA	LU632_RS22150	0.86	-1.5
4,233,538	-	typA	LU632_RS22150	0.86	-1.8
4,233,796	+				-0.9
4,233,796	+				+0.4
4,233,797	-				+0.6
4,233,797	-				-0.8
4,233,892	-				-0.1
4,233,945	+				-1.3
4,233,945	+				+0.1
4,233,945	+				-0.2
4,233,947	+				+0.5
4,233,947	+				-2.2
4,233,948	-				-1.3
4,233,958	+				+0.2
4,233,978	-				-0.8
4,233,978	-				+0.7
4,234,046	+	yihX	LU632_RS22155	0.18	-1.2
4,234,094	+	yihX	LU632_RS22155	0.26	-2.7
4,234,095	-	yihX	LU632_RS22155	0.26	-0.2
4,234,251	-	yihX	LU632_RS22155	0.52	+1.9
4,234,309	+	yihX	LU632_RS22155	0.62	+1.9
4,234,333	-	yihX	LU632_RS22155	0.66	-2.5
4,234,333	-	yihX	LU632_RS22155	0.66	-1.2
4,234,448	+	yihX	LU632_RS22155	0.85	+0.7
4,234,612	+				+0.8
4,234,613	-				+0.8
4,234,613	-				-0.2
4,234,630	+		LU632_RS22160	0.11	+3.1