Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnG and glnL are separated by 7 nucleotides glnL and glnA are separated by 186 nucleotides
LU632_RS22135: glnG - nitrogen regulation protein NR(I), at 4,227,459 to 4,228,868
glnG
LU632_RS22140: glnL - nitrogen regulation protein NR(II), at 4,228,876 to 4,229,925
glnL
LU632_RS22145: glnA - glutamate--ammonia ligase, at 4,230,112 to 4,231,521
glnA
Position (kb) 4228
4229
4230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4227.917 kb on + strand, within glnG at 4227.966 kb on + strand, within glnG at 4228.032 kb on - strand, within glnG at 4228.201 kb on - strand, within glnG at 4228.280 kb on + strand, within glnG at 4228.341 kb on + strand, within glnG at 4228.449 kb on - strand, within glnG at 4228.568 kb on - strand, within glnG at 4228.628 kb on + strand, within glnG at 4228.670 kb on + strand, within glnG at 4228.671 kb on - strand, within glnG at 4228.888 kb on - strand at 4228.936 kb on + strand at 4229.022 kb on - strand, within glnL at 4229.039 kb on - strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.332 kb on - strand, within glnL at 4229.427 kb on - strand, within glnL at 4229.427 kb on - strand, within glnL at 4229.553 kb on + strand, within glnL at 4229.553 kb on + strand, within glnL at 4229.554 kb on - strand, within glnL at 4229.554 kb on - strand, within glnL at 4229.618 kb on - strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.653 kb on - strand, within glnL at 4229.653 kb on - strand, within glnL at 4229.739 kb on + strand, within glnL at 4229.739 kb on + strand, within glnL at 4229.740 kb on - strand, within glnL at 4229.867 kb on - strand at 4229.868 kb on + strand at 4229.868 kb on + strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.925 kb on + strand at 4230.062 kb on + strand at 4230.062 kb on + strand at 4230.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,227,917 + glnG LU632_RS22135 0.32 -3.0 4,227,966 + glnG LU632_RS22135 0.36 +0.8 4,228,032 - glnG LU632_RS22135 0.41 -3.1 4,228,201 - glnG LU632_RS22135 0.53 +0.0 4,228,280 + glnG LU632_RS22135 0.58 -2.9 4,228,341 + glnG LU632_RS22135 0.63 -0.8 4,228,449 - glnG LU632_RS22135 0.70 -1.6 4,228,568 - glnG LU632_RS22135 0.79 -2.4 4,228,628 + glnG LU632_RS22135 0.83 -2.7 4,228,670 + glnG LU632_RS22135 0.86 -1.5 4,228,671 - glnG LU632_RS22135 0.86 -2.2 4,228,888 - +0.6 4,228,936 + -0.2 4,229,022 - glnL LU632_RS22140 0.14 -1.9 4,229,039 - glnL LU632_RS22140 0.16 -1.9 4,229,145 + glnL LU632_RS22140 0.26 -2.0 4,229,145 + glnL LU632_RS22140 0.26 +0.3 4,229,145 + glnL LU632_RS22140 0.26 -1.8 4,229,332 - glnL LU632_RS22140 0.43 -1.8 4,229,427 - glnL LU632_RS22140 0.52 -0.9 4,229,427 - glnL LU632_RS22140 0.52 +1.8 4,229,553 + glnL LU632_RS22140 0.64 -0.8 4,229,553 + glnL LU632_RS22140 0.64 -0.3 4,229,554 - glnL LU632_RS22140 0.65 -0.8 4,229,554 - glnL LU632_RS22140 0.65 -1.5 4,229,618 - glnL LU632_RS22140 0.71 -1.9 4,229,652 + glnL LU632_RS22140 0.74 -2.5 4,229,652 + glnL LU632_RS22140 0.74 -2.3 4,229,652 + glnL LU632_RS22140 0.74 -0.8 4,229,652 + glnL LU632_RS22140 0.74 -1.8 4,229,652 + glnL LU632_RS22140 0.74 -2.7 4,229,653 - glnL LU632_RS22140 0.74 -1.3 4,229,653 - glnL LU632_RS22140 0.74 -1.2 4,229,739 + glnL LU632_RS22140 0.82 -1.8 4,229,739 + glnL LU632_RS22140 0.82 -0.2 4,229,740 - glnL LU632_RS22140 0.82 -1.2 4,229,867 - -1.0 4,229,868 + -1.6 4,229,868 + -1.5 4,229,869 - -2.0 4,229,869 - -1.0 4,229,869 - -1.7 4,229,869 - -2.9 4,229,869 - -2.1 4,229,869 - -2.5 4,229,869 - -1.6 4,229,925 + -1.5 4,230,062 + -2.4 4,230,062 + -1.8 4,230,063 - -0.8
Or see this region's nucleotide sequence