Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22090

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,217,720	-		LU632_RS22085	0.30	-0.3
4,217,765	+		LU632_RS22085	0.33	+0.1
4,217,765	+		LU632_RS22085	0.33	+0.0
4,217,889	-		LU632_RS22085	0.42	-1.0
4,217,889	-		LU632_RS22085	0.42	+1.5
4,217,993	-		LU632_RS22085	0.50	-0.2
4,217,993	-		LU632_RS22085	0.50	-0.8
4,217,993	-		LU632_RS22085	0.50	+2.0
4,217,997	-		LU632_RS22085	0.50	+2.4
4,218,199	-		LU632_RS22085	0.65	-2.6
4,218,199	-		LU632_RS22085	0.65	+1.2
4,218,245	-		LU632_RS22085	0.68	-0.1
4,218,452	-		LU632_RS22085	0.83	+0.3
4,218,528	-		LU632_RS22085	0.88	+1.9
4,218,528	-		LU632_RS22085	0.88	+1.2
4,218,528	-		LU632_RS22085	0.88	-2.7
4,218,695	-				-2.7
4,218,698	-				+3.0
4,218,751	-		LU632_RS22090	0.25	-1.4
4,218,925	+				-0.8
4,218,925	+				-0.9
4,218,926	-				+0.4
4,218,926	-				+1.9
4,218,963	+				+0.6
4,218,963	+				-0.5
4,218,964	-				+0.4
4,219,016	+				+0.8
4,219,018	+				+1.1
4,219,019	-				-0.2
4,219,115	+				+4.4
4,219,115	+				-0.0
4,219,115	+				+0.1
4,219,115	+				+0.8
4,219,115	+				-0.4
4,219,115	+				+0.4
4,219,115	+				+0.1
4,219,115	+				-1.3
4,219,116	-				+1.2
4,219,116	-				-0.9
4,219,116	-				+0.1
4,219,116	-				+0.1
4,219,116	-				-0.8
4,219,116	-				+2.9
4,219,274	+		LU632_RS22095	0.25	+0.9
4,219,286	+		LU632_RS22095	0.27	+1.8
4,219,287	-		LU632_RS22095	0.27	+0.8
4,219,333	-		LU632_RS22095	0.32	+0.8
4,219,367	+		LU632_RS22095	0.35	+0.8
4,219,367	+		LU632_RS22095	0.35	+2.2
4,219,368	-		LU632_RS22095	0.35	-0.1
4,219,368	-		LU632_RS22095	0.35	+0.8
4,219,408	-		LU632_RS22095	0.40	+1.1
4,219,415	+		LU632_RS22095	0.40	-2.2
4,219,505	+		LU632_RS22095	0.50	-2.4
4,219,506	-		LU632_RS22095	0.50	+0.2
4,219,506	-		LU632_RS22095	0.50	+1.4
4,219,507	+		LU632_RS22095	0.50	+0.9
4,219,508	-		LU632_RS22095	0.50	+0.9
4,219,583	-		LU632_RS22095	0.58	+1.6
4,219,635	-		LU632_RS22095	0.63	-0.6
4,219,662	+		LU632_RS22095	0.66	-0.3
4,219,662	+		LU632_RS22095	0.66	+2.1
4,219,663	-		LU632_RS22095	0.66	+1.3
4,219,707	-		LU632_RS22095	0.71	+3.0
4,219,766	+		LU632_RS22095	0.77	-1.2
4,219,766	+		LU632_RS22095	0.77	+0.1
4,219,767	-		LU632_RS22095	0.77	-1.8
4,219,769	+		LU632_RS22095	0.77	+0.8
4,219,769	+		LU632_RS22095	0.77	+0.2
4,219,769	+		LU632_RS22095	0.77	-2.4
4,219,770	-		LU632_RS22095	0.77	+1.3
4,219,770	-		LU632_RS22095	0.77	-1.9
4,219,833	-		LU632_RS22095	0.84	+1.6
4,219,855	+		LU632_RS22095	0.86	-0.8
4,219,859	+		LU632_RS22095	0.87	+0.5
4,219,859	+		LU632_RS22095	0.87	+1.6
4,219,859	+		LU632_RS22095	0.87	-0.8
4,219,859	+		LU632_RS22095	0.87	-1.6
4,219,860	-		LU632_RS22095	0.87	+1.0
4,219,860	-		LU632_RS22095	0.87	+2.3
4,219,860	-		LU632_RS22095	0.87	-1.2
4,219,860	-		LU632_RS22095	0.87	+0.8
4,219,898	+				-2.8
4,219,899	-				+0.4
4,219,906	-				-1.0