Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21940

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,190,215	+		LU632_RS21935	0.31	+1.7
4,190,215	+		LU632_RS21935	0.31	-1.6
4,190,216	-		LU632_RS21935	0.31	+1.8
4,190,216	-		LU632_RS21935	0.31	-1.0
4,190,261	+		LU632_RS21935	0.36	-0.1
4,190,458	+		LU632_RS21935	0.56	+2.1
4,190,458	+		LU632_RS21935	0.56	+1.8
4,190,461	+		LU632_RS21935	0.57	+0.7
4,190,461	+		LU632_RS21935	0.57	+0.3
4,190,461	+		LU632_RS21935	0.57	+1.8
4,190,462	-		LU632_RS21935	0.57	-0.5
4,190,462	-		LU632_RS21935	0.57	-0.4
4,190,468	+		LU632_RS21935	0.57	-2.7
4,190,538	-		LU632_RS21935	0.64	+0.8
4,190,556	+		LU632_RS21935	0.66	-0.2
4,190,585	-		LU632_RS21935	0.69	-1.7
4,190,704	+		LU632_RS21935	0.81	+3.0
4,190,704	+		LU632_RS21935	0.81	+1.9
4,190,705	-		LU632_RS21935	0.81	-0.6
4,190,729	-		LU632_RS21935	0.84	-0.2
4,190,861	+				+0.8
4,190,862	-				+1.4
4,190,919	-				-0.0
4,190,919	-				+1.3
4,190,919	-				-0.4
4,190,919	-				-1.8
4,190,983	-				-0.2
4,190,988	+				-0.2
4,190,988	+				-0.2
4,190,989	-				-1.4
4,190,989	-				-1.3
4,191,043	+				+0.8
4,191,045	+				+0.4
4,191,045	+				-1.4
4,191,098	-				-0.4
4,191,391	-		LU632_RS21940	0.20	+0.4
4,191,394	+		LU632_RS21940	0.20	-2.6
4,191,394	+		LU632_RS21940	0.20	+0.8
4,191,638	+		LU632_RS21940	0.42	-0.8
4,191,828	-		LU632_RS21940	0.58	+1.8
4,191,940	-		LU632_RS21940	0.68	-1.8
4,191,988	+		LU632_RS21940	0.72	+0.8
4,192,189	+		LU632_RS21940	0.90	-1.2
4,192,214	+				+0.8
4,192,296	+				-0.5
4,192,302	+				-2.4
4,192,426	-				-3.2
4,192,513	+				-2.1
4,192,514	-				+0.2
4,192,544	+				+2.6
4,192,623	+		LU632_RS21945	0.13	-1.8
4,192,623	+		LU632_RS21945	0.13	-0.8
4,192,705	-		LU632_RS21945	0.23	+0.9
4,192,738	+		LU632_RS21945	0.27	+0.5
4,192,804	+		LU632_RS21945	0.34	-0.8
4,192,804	+		LU632_RS21945	0.34	+0.1
4,192,805	-		LU632_RS21945	0.34	-1.2
4,192,805	-		LU632_RS21945	0.34	-2.3
4,192,872	+		LU632_RS21945	0.42	-2.2
4,192,969	+		LU632_RS21945	0.53	+1.0
4,193,231	-		LU632_RS21945	0.83	+2.8
4,193,237	+		LU632_RS21945	0.84	+2.6
4,193,306	+				+3.0