Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21925

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,187,171	-	rfaF	LU632_RS21920	0.24	-2.4
4,187,776	+	rfaF	LU632_RS21920	0.81	+0.7
4,187,777	-	rfaF	LU632_RS21920	0.81	-1.6
4,188,007	+				-0.5
4,188,349	-	rfaC	LU632_RS21925	0.39	+0.7
4,188,395	+	rfaC	LU632_RS21925	0.44	-1.6
4,188,524	+	rfaC	LU632_RS21925	0.57	+0.7
4,188,524	+	rfaC	LU632_RS21925	0.57	-1.8
4,188,610	+	rfaC	LU632_RS21925	0.66	+0.7
4,188,610	+	rfaC	LU632_RS21925	0.66	-0.3
4,188,939	+				-3.5
4,188,999	+				+0.2
4,189,000	-				-2.4
4,189,011	-				-0.4
4,189,023	-				-0.1
4,189,023	-				-2.4
4,189,070	+		LU632_RS21930	0.13	-2.4
4,189,070	+		LU632_RS21930	0.13	-0.2
4,189,116	+		LU632_RS21930	0.18	-0.5
4,189,116	+		LU632_RS21930	0.18	+1.3
4,189,116	+		LU632_RS21930	0.18	+0.0
4,189,116	+		LU632_RS21930	0.18	-1.7
4,189,117	-		LU632_RS21930	0.18	-1.6
4,189,117	-		LU632_RS21930	0.18	-2.1
4,189,117	-		LU632_RS21930	0.18	+0.7
4,189,181	+		LU632_RS21930	0.25	+0.7
4,189,181	+		LU632_RS21930	0.25	+0.1
4,189,181	+		LU632_RS21930	0.25	-1.3
4,189,186	-		LU632_RS21930	0.26	+0.7
4,189,212	+		LU632_RS21930	0.29	+0.7
4,189,213	-		LU632_RS21930	0.29	-0.3
4,189,213	-		LU632_RS21930	0.29	-3.6
4,189,213	-		LU632_RS21930	0.29	+0.5
4,189,550	+		LU632_RS21930	0.66	-2.6
4,189,550	+		LU632_RS21930	0.66	-0.8
4,189,550	+		LU632_RS21930	0.66	-2.6
4,189,551	-		LU632_RS21930	0.66	-1.1
4,189,551	-		LU632_RS21930	0.66	-2.1
4,189,572	+		LU632_RS21930	0.68	-1.1
4,189,663	+		LU632_RS21930	0.78	-0.8
4,189,760	-		LU632_RS21930	0.88	+0.7
4,189,827	-				-0.2
4,189,827	-				-2.5
4,189,827	-				-2.5
4,189,846	+				+1.7
4,189,850	+				-0.3
4,189,850	+				-2.1
4,189,864	-				-0.3
4,189,919	+				+0.9
4,189,938	-				-0.2