Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trmL and cysE overlap by 4 nucleotides cysE and gpsA are separated by 65 nucleotides gpsA and secB overlap by 1 nucleotides secB and grxC are separated by 42 nucleotides grxC and LU632_RS21890 are separated by 18 nucleotides
LU632_RS21865: trmL - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 4,177,505 to 4,177,981
trmL
LU632_RS21870: cysE - serine O-acetyltransferase, at 4,177,978 to 4,178,799
cysE
LU632_RS21875: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 4,178,865 to 4,179,884
gpsA
LU632_RS21880: secB - protein-export chaperone SecB, at 4,179,884 to 4,180,351
secB
LU632_RS21885: grxC - glutaredoxin 3, at 4,180,394 to 4,180,645
grxC
LU632_RS21890: LU632_RS21890 - rhodanese-like domain-containing protein, at 4,180,664 to 4,181,095
_RS21890
Position (kb) 4178
4179
4180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4177.874 kb on - strand, within trmL at 4177.874 kb on - strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.952 kb on + strand at 4177.969 kb on + strand at 4178.820 kb on - strand at 4178.820 kb on - strand at 4178.844 kb on - strand at 4178.844 kb on - strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.947 kb on - strand at 4178.947 kb on - strand at 4178.966 kb on + strand at 4178.967 kb on - strand, within gpsA at 4179.119 kb on + strand, within gpsA at 4179.119 kb on + strand, within gpsA at 4179.126 kb on - strand, within gpsA at 4179.164 kb on + strand, within gpsA at 4179.165 kb on - strand, within gpsA at 4179.171 kb on - strand, within gpsA at 4179.315 kb on + strand, within gpsA at 4179.341 kb on + strand, within gpsA at 4179.372 kb on + strand, within gpsA at 4179.373 kb on - strand, within gpsA at 4179.373 kb on - strand, within gpsA at 4179.376 kb on - strand, within gpsA at 4179.399 kb on + strand, within gpsA at 4179.400 kb on - strand, within gpsA at 4179.400 kb on - strand, within gpsA at 4179.495 kb on - strand, within gpsA at 4179.526 kb on - strand, within gpsA at 4179.529 kb on - strand, within gpsA at 4179.603 kb on - strand, within gpsA at 4179.714 kb on + strand, within gpsA at 4179.714 kb on + strand, within gpsA at 4179.714 kb on + strand, within gpsA at 4179.715 kb on - strand, within gpsA at 4179.735 kb on - strand, within gpsA at 4179.737 kb on + strand, within gpsA at 4179.738 kb on - strand, within gpsA at 4179.738 kb on - strand, within gpsA at 4179.776 kb on + strand, within gpsA at 4179.797 kb on + strand at 4179.798 kb on - strand at 4179.818 kb on + strand at 4179.818 kb on + strand at 4179.819 kb on - strand at 4179.885 kb on + strand at 4179.975 kb on - strand, within secB at 4179.975 kb on - strand, within secB at 4180.013 kb on - strand, within secB at 4180.050 kb on + strand, within secB at 4180.231 kb on + strand, within secB at 4180.231 kb on + strand, within secB at 4180.301 kb on - strand, within secB at 4180.301 kb on - strand, within secB at 4180.302 kb on + strand, within secB at 4180.303 kb on - strand, within secB at 4180.365 kb on - strand at 4180.396 kb on - strand at 4180.401 kb on - strand at 4180.475 kb on - strand, within grxC at 4180.546 kb on + strand, within grxC at 4180.754 kb on - strand, within LU632_RS21890
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,177,874 - trmL LU632_RS21865 0.77 -2.4 4,177,874 - trmL LU632_RS21865 0.77 +2.8 4,177,928 + trmL LU632_RS21865 0.89 +0.3 4,177,928 + trmL LU632_RS21865 0.89 +1.0 4,177,928 + trmL LU632_RS21865 0.89 +0.9 4,177,929 - trmL LU632_RS21865 0.89 -1.2 4,177,929 - trmL LU632_RS21865 0.89 +0.8 4,177,952 + +0.8 4,177,969 + +0.8 4,178,820 - +1.2 4,178,820 - +1.8 4,178,844 - +0.8 4,178,844 - +0.9 4,178,911 - -2.1 4,178,911 - -1.8 4,178,947 - -2.1 4,178,947 - -1.6 4,178,966 + -1.6 4,178,967 - gpsA LU632_RS21875 0.10 -1.3 4,179,119 + gpsA LU632_RS21875 0.25 -2.2 4,179,119 + gpsA LU632_RS21875 0.25 -2.1 4,179,126 - gpsA LU632_RS21875 0.26 -0.2 4,179,164 + gpsA LU632_RS21875 0.29 +0.2 4,179,165 - gpsA LU632_RS21875 0.29 -1.6 4,179,171 - gpsA LU632_RS21875 0.30 +0.5 4,179,315 + gpsA LU632_RS21875 0.44 -1.0 4,179,341 + gpsA LU632_RS21875 0.47 -1.2 4,179,372 + gpsA LU632_RS21875 0.50 -1.4 4,179,373 - gpsA LU632_RS21875 0.50 -1.4 4,179,373 - gpsA LU632_RS21875 0.50 -0.8 4,179,376 - gpsA LU632_RS21875 0.50 -0.8 4,179,399 + gpsA LU632_RS21875 0.52 -0.2 4,179,400 - gpsA LU632_RS21875 0.52 -0.1 4,179,400 - gpsA LU632_RS21875 0.52 +0.4 4,179,495 - gpsA LU632_RS21875 0.62 -2.4 4,179,526 - gpsA LU632_RS21875 0.65 -0.7 4,179,529 - gpsA LU632_RS21875 0.65 -0.6 4,179,603 - gpsA LU632_RS21875 0.72 -1.2 4,179,714 + gpsA LU632_RS21875 0.83 -1.2 4,179,714 + gpsA LU632_RS21875 0.83 -0.1 4,179,714 + gpsA LU632_RS21875 0.83 -1.8 4,179,715 - gpsA LU632_RS21875 0.83 -0.5 4,179,735 - gpsA LU632_RS21875 0.85 -2.3 4,179,737 + gpsA LU632_RS21875 0.85 -0.7 4,179,738 - gpsA LU632_RS21875 0.86 -1.1 4,179,738 - gpsA LU632_RS21875 0.86 -1.0 4,179,776 + gpsA LU632_RS21875 0.89 -0.2 4,179,797 + -1.6 4,179,798 - -1.1 4,179,818 + -2.1 4,179,818 + -1.1 4,179,819 - -2.2 4,179,885 + -0.2 4,179,975 - secB LU632_RS21880 0.19 -0.8 4,179,975 - secB LU632_RS21880 0.19 -0.8 4,180,013 - secB LU632_RS21880 0.28 -1.2 4,180,050 + secB LU632_RS21880 0.35 -1.2 4,180,231 + secB LU632_RS21880 0.74 -0.6 4,180,231 + secB LU632_RS21880 0.74 +0.8 4,180,301 - secB LU632_RS21880 0.89 +0.4 4,180,301 - secB LU632_RS21880 0.89 -2.7 4,180,302 + secB LU632_RS21880 0.89 -1.2 4,180,303 - secB LU632_RS21880 0.90 -1.0 4,180,365 - -3.0 4,180,396 - -1.2 4,180,401 - +0.3 4,180,475 - grxC LU632_RS21885 0.32 +0.3 4,180,546 + grxC LU632_RS21885 0.60 +2.3 4,180,754 - LU632_RS21890 0.21 +1.7
Or see this region's nucleotide sequence