Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21825

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,168,672	+	yhjD	LU632_RS21815	0.89	-3.9
4,168,762	-				+1.4
4,168,782	+				+0.0
4,168,783	-				+0.1
4,168,783	-				+1.6
4,168,783	-				+1.1
4,168,845	+				+1.2
4,168,851	+		LU632_RS21820	0.10	-2.1
4,168,852	-		LU632_RS21820	0.10	-1.1
4,168,852	-		LU632_RS21820	0.10	-2.1
4,168,910	+		LU632_RS21820	0.18	-2.4
4,168,910	+		LU632_RS21820	0.18	+2.3
4,168,910	+		LU632_RS21820	0.18	+2.5
4,168,911	-		LU632_RS21820	0.18	+0.6
4,168,911	-		LU632_RS21820	0.18	-0.0
4,169,100	+		LU632_RS21820	0.43	+1.1
4,169,106	+		LU632_RS21820	0.44	+2.3
4,169,198	+		LU632_RS21820	0.56	+0.2
4,169,198	+		LU632_RS21820	0.56	+1.5
4,169,198	+		LU632_RS21820	0.56	+0.9
4,169,198	+		LU632_RS21820	0.56	+1.8
4,169,199	-		LU632_RS21820	0.56	-1.8
4,169,199	-		LU632_RS21820	0.56	+1.6
4,169,199	-		LU632_RS21820	0.56	-2.5
4,169,199	-		LU632_RS21820	0.56	-2.4
4,169,199	-		LU632_RS21820	0.56	+0.1
4,169,199	-		LU632_RS21820	0.56	-0.7
4,169,232	+		LU632_RS21820	0.60	-0.2
4,169,336	+		LU632_RS21820	0.74	+0.8
4,169,336	+		LU632_RS21820	0.74	+1.0
4,169,337	-		LU632_RS21820	0.74	-0.2
4,169,342	+		LU632_RS21820	0.75	+1.1
4,169,515	-				-1.2
4,169,579	+				+0.8
4,169,582	-				-0.8
4,169,601	+				-0.8
4,169,604	-				-1.2
4,169,624	-				+1.0
4,169,686	+				+0.3
4,169,699	-				+2.8
4,169,871	-		LU632_RS21825	0.30	+0.2
4,169,871	-		LU632_RS21825	0.30	-0.8
4,169,871	-		LU632_RS21825	0.30	-1.8
4,170,490	-				-0.4
4,170,490	-				-0.6
4,170,505	+				+0.2
4,170,506	-				+0.9
4,170,507	+				-0.9
4,170,507	+				-1.2
4,170,507	+				+2.8
4,170,508	-				+0.8
4,170,508	-				-2.8
4,170,545	-				-1.2
4,170,558	-				+1.8
4,170,578	-				+0.3
4,170,587	+				+1.2
4,170,599	-				-0.6
4,170,602	+				-0.2
4,170,602	+				-0.2
4,170,700	+		LU632_RS21830	0.12	-0.4
4,170,701	-		LU632_RS21830	0.13	-0.1
4,170,778	+		LU632_RS21830	0.20	+0.5
4,170,778	+		LU632_RS21830	0.20	-2.3
4,170,922	+		LU632_RS21830	0.35	+0.5
4,170,978	-		LU632_RS21830	0.40	+1.3
4,171,037	+		LU632_RS21830	0.46	-1.2
4,171,038	-		LU632_RS21830	0.47	-0.8
4,171,040	-		LU632_RS21830	0.47	-0.1
4,171,040	-		LU632_RS21830	0.47	-0.2
4,171,102	+		LU632_RS21830	0.53	-0.2
4,171,103	-		LU632_RS21830	0.53	-0.1
4,171,103	-		LU632_RS21830	0.53	+0.0
4,171,130	+		LU632_RS21830	0.56	+1.9
4,171,185	+		LU632_RS21830	0.61	-0.5
4,171,186	-		LU632_RS21830	0.61	+0.4
4,171,219	-		LU632_RS21830	0.65	+0.1
4,171,232	+		LU632_RS21830	0.66	+0.8
4,171,232	+		LU632_RS21830	0.66	+5.3
4,171,232	+		LU632_RS21830	0.66	-0.5
4,171,232	+		LU632_RS21830	0.66	+1.7
4,171,232	+		LU632_RS21830	0.66	+1.5
4,171,233	-		LU632_RS21830	0.66	-0.8
4,171,233	-		LU632_RS21830	0.66	-1.4
4,171,235	-		LU632_RS21830	0.66	+0.6
4,171,317	+		LU632_RS21830	0.75	+0.3
4,171,355	+		LU632_RS21830	0.78	+1.8
4,171,428	-		LU632_RS21830	0.86	+0.1
4,171,429	+		LU632_RS21830	0.86	-3.2
4,171,429	+		LU632_RS21830	0.86	-0.0
4,171,430	-		LU632_RS21830	0.86	-0.1
4,171,430	-		LU632_RS21830	0.86	+0.7
4,171,451	+		LU632_RS21830	0.88	-0.1
4,171,452	-		LU632_RS21830	0.88	-0.7
4,171,452	-		LU632_RS21830	0.88	+0.4
4,171,452	-		LU632_RS21830	0.88	+3.8
4,171,452	-		LU632_RS21830	0.88	+0.7
4,171,452	-		LU632_RS21830	0.88	-0.8
4,171,452	-		LU632_RS21830	0.88	-3.1
4,171,453	+		LU632_RS21830	0.88	-1.1
4,171,463	-		LU632_RS21830	0.89	+1.8