Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21565 and LU632_RS21570 are separated by 1 nucleotides LU632_RS21570 and LU632_RS21575 are separated by 136 nucleotides LU632_RS21575 and LU632_RS21580 are separated by 44 nucleotides LU632_RS21580 and traF are separated by 52 nucleotides
LU632_RS21565: LU632_RS21565 - hypothetical protein, at 4,128,488 to 4,128,721
_RS21565
LU632_RS21570: LU632_RS21570 - pyridoxamine 5'-phosphate oxidase family protein, at 4,128,723 to 4,129,247
_RS21570
LU632_RS21575: LU632_RS21575 - Rpn family recombination-promoting nuclease/putative transposase, at 4,129,384 to 4,129,754
_RS21575
LU632_RS21580: LU632_RS21580 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,129,799 to 4,130,080
_RS21580
LU632_RS21585: traF - conjugal transfer protein TraF, at 4,130,133 to 4,130,621
traF
Position (kb) 4129
4130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4128.392 kb on + strand at 4128.392 kb on + strand at 4128.400 kb on - strand at 4128.400 kb on - strand at 4128.413 kb on - strand at 4128.413 kb on - strand at 4128.413 kb on - strand at 4128.509 kb on + strand at 4128.520 kb on + strand, within LU632_RS21565 at 4128.551 kb on + strand, within LU632_RS21565 at 4128.551 kb on + strand, within LU632_RS21565 at 4128.556 kb on + strand, within LU632_RS21565 at 4128.562 kb on + strand, within LU632_RS21565 at 4128.701 kb on - strand at 4128.719 kb on + strand at 4128.826 kb on - strand, within LU632_RS21570 at 4128.901 kb on + strand, within LU632_RS21570 at 4128.902 kb on - strand, within LU632_RS21570 at 4128.902 kb on - strand, within LU632_RS21570 at 4129.022 kb on + strand, within LU632_RS21570 at 4129.023 kb on - strand, within LU632_RS21570 at 4129.023 kb on - strand, within LU632_RS21570 at 4129.035 kb on + strand, within LU632_RS21570 at 4129.036 kb on - strand, within LU632_RS21570 at 4129.036 kb on - strand, within LU632_RS21570 at 4129.061 kb on - strand, within LU632_RS21570 at 4129.091 kb on - strand, within LU632_RS21570 at 4129.091 kb on - strand, within LU632_RS21570 at 4129.162 kb on + strand, within LU632_RS21570 at 4129.251 kb on + strand at 4129.254 kb on + strand at 4129.275 kb on + strand at 4129.275 kb on + strand at 4129.275 kb on + strand at 4129.276 kb on - strand at 4129.276 kb on - strand at 4129.354 kb on + strand at 4129.452 kb on + strand, within LU632_RS21575 at 4129.611 kb on + strand, within LU632_RS21575 at 4129.612 kb on - strand, within LU632_RS21575 at 4129.612 kb on - strand, within LU632_RS21575 at 4129.678 kb on - strand, within LU632_RS21575 at 4129.718 kb on + strand at 4129.791 kb on - strand at 4129.806 kb on - strand at 4129.858 kb on + strand, within LU632_RS21580 at 4129.989 kb on - strand, within LU632_RS21580 at 4129.989 kb on - strand, within LU632_RS21580 at 4130.127 kb on - strand at 4130.160 kb on - strand at 4130.219 kb on + strand, within traF at 4130.222 kb on + strand, within traF at 4130.222 kb on + strand, within traF at 4130.223 kb on - strand, within traF at 4130.223 kb on - strand, within traF at 4130.265 kb on + strand, within traF at 4130.304 kb on - strand, within traF at 4130.304 kb on - strand, within traF at 4130.416 kb on + strand, within traF at 4130.417 kb on - strand, within traF at 4130.496 kb on + strand, within traF
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 4,128,392 + -0.2 4,128,392 + -0.2 4,128,400 - -0.5 4,128,400 - -2.3 4,128,413 - +0.1 4,128,413 - -0.3 4,128,413 - +5.2 4,128,509 + +0.7 4,128,520 + LU632_RS21565 0.14 +0.7 4,128,551 + LU632_RS21565 0.27 +1.0 4,128,551 + LU632_RS21565 0.27 +1.2 4,128,556 + LU632_RS21565 0.29 +2.1 4,128,562 + LU632_RS21565 0.32 +1.1 4,128,701 - -0.1 4,128,719 + -1.0 4,128,826 - LU632_RS21570 0.20 +1.1 4,128,901 + LU632_RS21570 0.34 -0.9 4,128,902 - LU632_RS21570 0.34 +0.2 4,128,902 - LU632_RS21570 0.34 -0.5 4,129,022 + LU632_RS21570 0.57 -0.1 4,129,023 - LU632_RS21570 0.57 -0.6 4,129,023 - LU632_RS21570 0.57 -0.3 4,129,035 + LU632_RS21570 0.59 +0.7 4,129,036 - LU632_RS21570 0.60 -0.6 4,129,036 - LU632_RS21570 0.60 +0.7 4,129,061 - LU632_RS21570 0.64 -0.1 4,129,091 - LU632_RS21570 0.70 -0.8 4,129,091 - LU632_RS21570 0.70 -3.0 4,129,162 + LU632_RS21570 0.84 -3.1 4,129,251 + +0.7 4,129,254 + +2.7 4,129,275 + +0.1 4,129,275 + +0.5 4,129,275 + -0.1 4,129,276 - -0.9 4,129,276 - +0.7 4,129,354 + +0.4 4,129,452 + LU632_RS21575 0.18 -0.9 4,129,611 + LU632_RS21575 0.61 -1.9 4,129,612 - LU632_RS21575 0.61 -2.1 4,129,612 - LU632_RS21575 0.61 -0.7 4,129,678 - LU632_RS21575 0.79 -1.8 4,129,718 + -0.1 4,129,791 - -2.6 4,129,806 - +0.1 4,129,858 + LU632_RS21580 0.21 -3.7 4,129,989 - LU632_RS21580 0.67 +0.2 4,129,989 - LU632_RS21580 0.67 -0.8 4,130,127 - -0.7 4,130,160 - +0.7 4,130,219 + traF LU632_RS21585 0.18 -1.6 4,130,222 + traF LU632_RS21585 0.18 +2.1 4,130,222 + traF LU632_RS21585 0.18 +0.7 4,130,223 - traF LU632_RS21585 0.18 +0.2 4,130,223 - traF LU632_RS21585 0.18 -0.2 4,130,265 + traF LU632_RS21585 0.27 +1.3 4,130,304 - traF LU632_RS21585 0.35 +1.7 4,130,304 - traF LU632_RS21585 0.35 -1.3 4,130,416 + traF LU632_RS21585 0.58 -2.3 4,130,417 - traF LU632_RS21585 0.58 -0.4 4,130,496 + traF LU632_RS21585 0.74 +0.7
Or see this region's nucleotide sequence