Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21550

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,120,245	+		LU632_RS21545	0.23	-1.3
4,120,637	+				+0.2
4,120,637	+				+0.8
4,120,637	+				+1.5
4,120,637	+				-0.5
4,120,637	+				-3.2
4,120,638	-				+2.3
4,120,638	-				+0.7
4,120,638	-				-0.1
4,120,638	-				-0.9
4,120,638	-				+0.5
4,120,657	+				+1.1
4,120,925	-				-1.3
4,120,946	-				+0.1
4,121,122	+				+0.5
4,121,123	-				+0.3
4,121,167	+				-0.6
4,121,168	-				+2.3
4,121,184	+				+0.5
4,121,185	-				+3.7
4,121,189	+				-0.2
4,121,192	+				+1.1
4,121,196	+				-1.6
4,121,196	+				-0.5
4,121,197	-				-1.4
4,121,197	-				-1.3
4,121,197	-				-0.4
4,121,198	+				+2.3
4,121,198	+				-0.5
4,121,199	-				+1.2
4,121,199	-				+0.5
4,121,258	-		LU632_RS21550	0.22	-0.3
4,121,258	-		LU632_RS21550	0.22	-1.7
4,121,299	+		LU632_RS21550	0.45	-1.6
4,121,374	+		LU632_RS21550	0.89	-1.8
4,121,375	-		LU632_RS21550	0.89	-2.3
4,121,384	+				-0.2
4,121,406	-				+0.2
4,121,427	-				+1.3
4,121,435	+				+1.5
4,121,730	+				-0.7
4,121,732	+				-0.3
4,121,733	-				+0.0
4,121,733	-				-2.4
4,121,787	+				-0.6
4,121,787	+				-0.1
4,121,787	+				+4.5
4,121,855	+				+0.2
4,121,855	+				+0.7
4,121,869	+				-0.0
4,121,870	-				+0.2
4,121,895	-				+0.7
4,121,914	-				+3.4
4,122,036	+				+2.3
4,122,037	-				-0.8
4,122,227	+		LU632_RS21555	0.11	+2.6
4,122,230	-		LU632_RS21555	0.11	+0.3