Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21245

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,055,704	+	mlaD	LU632_RS21235	0.69	+0.2
4,055,705	-	mlaD	LU632_RS21235	0.69	-1.4
4,055,752	-	mlaD	LU632_RS21235	0.77	-0.7
4,055,838	-				+2.1
4,055,850	-				+0.6
4,056,027	+	mlaE	LU632_RS21240	0.18	-3.3
4,056,028	-	mlaE	LU632_RS21240	0.19	-1.0
4,056,071	+	mlaE	LU632_RS21240	0.24	-1.9
4,056,101	+	mlaE	LU632_RS21240	0.28	-2.8
4,056,122	+	mlaE	LU632_RS21240	0.31	-1.8
4,056,166	-	mlaE	LU632_RS21240	0.36	-1.7
4,056,381	+	mlaE	LU632_RS21240	0.64	-2.1
4,056,424	+	mlaE	LU632_RS21240	0.69	-0.8
4,056,425	-	mlaE	LU632_RS21240	0.69	+0.6
4,056,590	+				-0.7
4,056,590	+				-0.7
4,056,620	+				-1.3
4,056,620	+				-0.6
4,056,623	+				-0.7
4,056,675	-				+0.2
4,056,675	-				+0.2
4,056,704	+				-0.7
4,056,775	-	mlaF	LU632_RS21245	0.13	-1.8
4,056,775	-	mlaF	LU632_RS21245	0.13	-1.0
4,056,839	+	mlaF	LU632_RS21245	0.20	-0.1
4,056,840	-	mlaF	LU632_RS21245	0.21	+0.2
4,056,845	+	mlaF	LU632_RS21245	0.21	-1.0
4,056,845	+	mlaF	LU632_RS21245	0.21	-0.1
4,056,928	+	mlaF	LU632_RS21245	0.31	-3.0
4,056,992	-	mlaF	LU632_RS21245	0.39	-1.0
4,057,146	+	mlaF	LU632_RS21245	0.58	-0.8
4,057,146	+	mlaF	LU632_RS21245	0.58	-2.0
4,057,146	+	mlaF	LU632_RS21245	0.58	+0.7
4,057,146	+	mlaF	LU632_RS21245	0.58	-1.7
4,057,146	+	mlaF	LU632_RS21245	0.58	-0.4
4,057,194	+	mlaF	LU632_RS21245	0.64	-0.7
4,057,198	+	mlaF	LU632_RS21245	0.65	+0.7
4,057,199	-	mlaF	LU632_RS21245	0.65	-2.0
4,057,237	+	mlaF	LU632_RS21245	0.69	-1.2
4,057,328	-	mlaF	LU632_RS21245	0.81	-1.0
4,057,408	-				-2.6
4,057,408	-				-0.3
4,057,460	-				-1.8
4,057,517	-				-2.8
4,057,532	-				-1.4
4,057,561	+				-1.0
4,057,562	-				-0.3
4,057,562	-				+1.0
4,057,571	+				-1.6
4,057,571	+				-1.6
4,057,572	-				+1.3
4,057,660	-				-0.6
4,057,757	+				+2.5
4,057,759	+				+2.0
4,057,759	+				-0.4
4,057,759	+				-2.6
4,057,782	+				+2.3
4,057,844	+		LU632_RS21250	0.13	+1.7
4,057,932	-		LU632_RS21250	0.22	-2.6
4,057,947	+		LU632_RS21250	0.24	-0.6
4,058,125	+		LU632_RS21250	0.42	+1.2
4,058,169	+		LU632_RS21250	0.46	+1.7
4,058,172	+		LU632_RS21250	0.47	-3.3
4,058,265	+		LU632_RS21250	0.56	-0.3
4,058,461	+		LU632_RS21250	0.76	-1.8