Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21225

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
4,053,976	-				-2.1
4,054,021	-				+1.6
4,054,222	-	ibaG	LU632_RS21220	0.84	-1.6
4,054,326	+				-1.0
4,054,421	+	mlaB	LU632_RS21225	0.11	-1.7
4,054,452	+	mlaB	LU632_RS21225	0.22	-1.6
4,054,502	-	mlaB	LU632_RS21225	0.39	+0.5
4,054,582	-	mlaB	LU632_RS21225	0.66	-1.3
4,054,582	-	mlaB	LU632_RS21225	0.66	-0.8
4,054,582	-	mlaB	LU632_RS21225	0.66	+1.7
4,054,606	+	mlaB	LU632_RS21225	0.74	-1.6
4,054,607	-	mlaB	LU632_RS21225	0.74	+0.4
4,054,607	-	mlaB	LU632_RS21225	0.74	-3.2
4,054,609	-	mlaB	LU632_RS21225	0.75	-1.7
4,054,657	+				+0.2
4,054,727	+				-2.3
4,054,728	-				-0.4
4,054,790	+	mlaC	LU632_RS21230	0.17	-2.3
4,054,807	-	mlaC	LU632_RS21230	0.20	-0.3
4,054,823	+	mlaC	LU632_RS21230	0.22	-0.6
4,054,829	-	mlaC	LU632_RS21230	0.23	-0.3
4,054,985	-	mlaC	LU632_RS21230	0.48	-0.4
4,054,985	-	mlaC	LU632_RS21230	0.48	+1.7
4,055,021	-	mlaC	LU632_RS21230	0.53	-1.8
4,055,021	-	mlaC	LU632_RS21230	0.53	-2.8
4,055,036	+	mlaC	LU632_RS21230	0.56	-0.9
4,055,042	-	mlaC	LU632_RS21230	0.57	+0.2
4,055,104	+	mlaC	LU632_RS21230	0.66	-0.4
4,055,104	+	mlaC	LU632_RS21230	0.66	-0.7
4,055,104	+	mlaC	LU632_RS21230	0.66	-0.6
4,055,104	+	mlaC	LU632_RS21230	0.66	+0.7
4,055,105	-	mlaC	LU632_RS21230	0.67	-1.3
4,055,105	-	mlaC	LU632_RS21230	0.67	-0.0
4,055,115	+	mlaC	LU632_RS21230	0.68	-2.4
4,055,230	-	mlaC	LU632_RS21230	0.86	-1.6
4,055,282	+				-0.0
4,055,339	+				-2.7
4,055,339	+				-1.3
4,055,340	-				+0.3
4,055,405	-	mlaD	LU632_RS21235	0.16	-0.2
4,055,407	+	mlaD	LU632_RS21235	0.16	-0.3
4,055,408	-	mlaD	LU632_RS21235	0.16	-0.2
4,055,408	-	mlaD	LU632_RS21235	0.16	-0.5
4,055,424	+	mlaD	LU632_RS21235	0.19	-2.1
4,055,425	-	mlaD	LU632_RS21235	0.19	+0.6
4,055,429	-	mlaD	LU632_RS21235	0.20	-1.8
4,055,467	+	mlaD	LU632_RS21235	0.27	-0.4
4,055,468	-	mlaD	LU632_RS21235	0.27	-0.9
4,055,468	-	mlaD	LU632_RS21235	0.27	-1.3
4,055,615	-	mlaD	LU632_RS21235	0.53	-2.6
4,055,632	+	mlaD	LU632_RS21235	0.56	-1.7