Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20900

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,993,387	+		LU632_RS20895	0.50	-2.0
3,993,549	-		LU632_RS20895	0.61	-0.3
3,993,549	-		LU632_RS20895	0.61	-0.5
3,993,689	-		LU632_RS20895	0.71	-2.1
3,993,716	-		LU632_RS20895	0.73	-2.0
3,993,769	-		LU632_RS20895	0.76	-1.6
3,993,781	+		LU632_RS20895	0.77	-1.6
3,993,781	+		LU632_RS20895	0.77	-1.1
3,993,782	-		LU632_RS20895	0.77	+3.1
3,993,782	-		LU632_RS20895	0.77	-0.9
3,993,782	-		LU632_RS20895	0.77	-1.6
3,993,782	-		LU632_RS20895	0.77	-0.6
3,993,821	+		LU632_RS20895	0.80	+2.4
3,993,822	-		LU632_RS20895	0.80	+0.9
3,993,908	+		LU632_RS20895	0.86	-1.9
3,993,909	-		LU632_RS20895	0.86	-1.6
3,993,912	+		LU632_RS20895	0.86	-0.9
3,993,912	+		LU632_RS20895	0.86	+0.6
3,993,913	-		LU632_RS20895	0.86	+0.1
3,993,913	-		LU632_RS20895	0.86	-0.9
3,993,974	+				+2.0
3,993,974	+				-1.3
3,994,114	-				-1.3
3,994,114	-				+1.3
3,994,148	+				+1.6
3,994,148	+				+0.1
3,994,169	+				+0.8
3,994,175	-				-0.1
3,994,250	-				-0.5
3,994,338	+	argF	LU632_RS20900	0.13	-0.9
3,994,339	-	argF	LU632_RS20900	0.13	+0.4
3,994,339	-	argF	LU632_RS20900	0.13	-0.3
3,994,427	+	argF	LU632_RS20900	0.22	-1.7
3,994,528	-	argF	LU632_RS20900	0.32	-1.9
3,994,711	+	argF	LU632_RS20900	0.50	-1.0
3,994,734	+	argF	LU632_RS20900	0.52	+0.7
3,994,734	+	argF	LU632_RS20900	0.52	-2.1
3,994,914	+	argF	LU632_RS20900	0.70	+0.1
3,994,914	+	argF	LU632_RS20900	0.70	+4.6
3,994,914	+	argF	LU632_RS20900	0.70	+0.1
3,994,914	+	argF	LU632_RS20900	0.70	-1.2
3,994,914	+	argF	LU632_RS20900	0.70	-0.7
3,994,914	+	argF	LU632_RS20900	0.70	-3.3
3,994,915	-	argF	LU632_RS20900	0.70	-0.5
3,994,915	-	argF	LU632_RS20900	0.70	+0.7
3,994,915	-	argF	LU632_RS20900	0.70	-1.4
3,994,915	-	argF	LU632_RS20900	0.70	-1.3
3,994,915	-	argF	LU632_RS20900	0.70	-2.9
3,994,915	-	argF	LU632_RS20900	0.70	-1.6
3,994,915	-	argF	LU632_RS20900	0.70	-2.7
3,994,989	+	argF	LU632_RS20900	0.78	-1.0
3,994,989	+	argF	LU632_RS20900	0.78	-1.9
3,995,290	-				-0.9
3,995,318	+				-2.6
3,995,328	+				-0.3
3,995,328	+				-1.2
3,995,466	+	rraB	LU632_RS20905	0.22	-0.5
3,995,466	+	rraB	LU632_RS20905	0.22	-0.1
3,995,469	-	rraB	LU632_RS20905	0.23	-0.3
3,995,471	+	rraB	LU632_RS20905	0.24	-0.1
3,995,695	-	rraB	LU632_RS20905	0.77	+3.6
3,995,695	-	rraB	LU632_RS20905	0.77	-2.7
3,995,712	+	rraB	LU632_RS20905	0.81	+0.3
3,995,712	+	rraB	LU632_RS20905	0.81	-2.5
3,995,712	+	rraB	LU632_RS20905	0.81	+0.3
3,995,713	-	rraB	LU632_RS20905	0.82	+2.5
3,995,747	+	rraB	LU632_RS20905	0.90	+0.2
3,995,748	-				-0.8
3,995,898	+				-2.0
3,995,994	-		LU632_RS20910	0.12	+0.5
3,995,999	+		LU632_RS20910	0.13	+2.4
3,996,067	+		LU632_RS20910	0.22	+1.7
3,996,068	-		LU632_RS20910	0.22	+0.1
3,996,098	+		LU632_RS20910	0.26	-0.5
3,996,144	+		LU632_RS20910	0.32	+2.9