Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20175

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,839,588	+		LU632_RS20160	0.24	+0.9
3,839,589	-		LU632_RS20160	0.25	+3.4
3,839,589	-		LU632_RS20160	0.25	+0.1
3,839,589	-		LU632_RS20160	0.25	-1.5
3,839,703	+		LU632_RS20160	0.38	+0.1
3,839,815	+		LU632_RS20160	0.52	+1.9
3,839,998	-		LU632_RS20160	0.73	+1.0
3,840,096	+		LU632_RS20160	0.85	+1.4
3,840,100	+		LU632_RS20160	0.86	+0.7
3,840,133	-		LU632_RS20160	0.90	-0.4
3,840,169	-				-1.5
3,840,323	-		LU632_RS20165	0.47	-2.5
3,840,358	-		LU632_RS20165	0.60	-0.5
3,840,400	-		LU632_RS20165	0.75	+1.1
3,840,400	-		LU632_RS20165	0.75	+0.3
3,840,600	+				-0.5
3,840,603	-		LU632_RS20175	0.24	-1.1
3,840,864	-				+1.3
3,841,160	+		LU632_RS20180	0.34	-1.3
3,841,280	-		LU632_RS20180	0.65	+1.2
3,841,282	+		LU632_RS20180	0.65	+1.1
3,841,283	-		LU632_RS20180	0.65	+1.6
3,841,577	-		LU632_RS20185	0.24	+2.1
3,841,652	-		LU632_RS20185	0.40	-0.6
3,841,670	+		LU632_RS20185	0.44	-0.8
3,841,773	+		LU632_RS20185	0.65	-1.6
3,841,773	+		LU632_RS20185	0.65	-1.6
3,841,774	-		LU632_RS20185	0.65	+4.1