Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panD and tnpA are separated by 68 nucleotides tnpA and LU632_RS20120 are separated by 235 nucleotides LU632_RS20120 and LU632_RS20125 overlap by 4 nucleotides
LU632_RS20110: panD - aspartate 1-decarboxylase, at 3,830,725 to 3,831,105
panD
LU632_RS20115: tnpA - IS200/IS605 family transposase, at 3,831,174 to 3,831,620
tnpA
LU632_RS20120: LU632_RS20120 - ABC transporter permease, at 3,831,856 to 3,832,626
_RS20120
LU632_RS20125: LU632_RS20125 - ABC transporter ATP-binding protein, at 3,832,623 to 3,833,549
_RS20125
Position (kb) 3831
3832
3833 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3830.859 kb on + strand, within panD at 3830.860 kb on - strand, within panD at 3830.863 kb on + strand, within panD at 3830.863 kb on + strand, within panD at 3830.864 kb on + strand, within panD at 3830.864 kb on - strand, within panD at 3830.864 kb on - strand, within panD at 3830.896 kb on + strand, within panD at 3830.897 kb on - strand, within panD at 3830.897 kb on - strand, within panD at 3830.901 kb on + strand, within panD at 3830.901 kb on + strand, within panD at 3830.979 kb on - strand, within panD at 3830.983 kb on - strand, within panD at 3831.034 kb on - strand, within panD at 3831.765 kb on + strand at 3831.854 kb on + strand at 3831.905 kb on + strand at 3831.905 kb on + strand at 3831.905 kb on + strand at 3831.943 kb on + strand, within LU632_RS20120 at 3832.302 kb on - strand, within LU632_RS20120 at 3832.454 kb on + strand, within LU632_RS20120 at 3832.454 kb on + strand, within LU632_RS20120 at 3832.459 kb on - strand, within LU632_RS20120 at 3832.577 kb on - strand at 3832.614 kb on - strand at 3832.614 kb on - strand at 3832.615 kb on + strand at 3832.698 kb on - strand at 3832.724 kb on + strand, within LU632_RS20125 at 3832.788 kb on - strand, within LU632_RS20125 at 3832.925 kb on + strand, within LU632_RS20125 at 3832.966 kb on + strand, within LU632_RS20125 at 3832.967 kb on - strand, within LU632_RS20125 at 3832.982 kb on + strand, within LU632_RS20125 at 3832.992 kb on - strand, within LU632_RS20125 at 3833.282 kb on + strand, within LU632_RS20125 at 3833.543 kb on - strand at 3833.555 kb on + strand at 3833.597 kb on - strand at 3833.616 kb on + strand at 3833.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 3,830,859 + panD LU632_RS20110 0.35 +1.7 3,830,860 - panD LU632_RS20110 0.35 -0.6 3,830,863 + panD LU632_RS20110 0.36 -2.2 3,830,863 + panD LU632_RS20110 0.36 -1.6 3,830,864 + panD LU632_RS20110 0.36 -0.3 3,830,864 - panD LU632_RS20110 0.36 +0.9 3,830,864 - panD LU632_RS20110 0.36 +1.0 3,830,896 + panD LU632_RS20110 0.45 +0.9 3,830,897 - panD LU632_RS20110 0.45 +0.7 3,830,897 - panD LU632_RS20110 0.45 -0.5 3,830,901 + panD LU632_RS20110 0.46 -1.1 3,830,901 + panD LU632_RS20110 0.46 -1.3 3,830,979 - panD LU632_RS20110 0.67 +1.1 3,830,983 - panD LU632_RS20110 0.68 -0.0 3,831,034 - panD LU632_RS20110 0.81 +1.5 3,831,765 + +1.4 3,831,854 + -2.1 3,831,905 + +0.4 3,831,905 + -0.9 3,831,905 + -0.4 3,831,943 + LU632_RS20120 0.11 -1.6 3,832,302 - LU632_RS20120 0.58 -0.9 3,832,454 + LU632_RS20120 0.78 -0.3 3,832,454 + LU632_RS20120 0.78 -2.1 3,832,459 - LU632_RS20120 0.78 -0.5 3,832,577 - -0.9 3,832,614 - -1.6 3,832,614 - +0.8 3,832,615 + -1.6 3,832,698 - +2.0 3,832,724 + LU632_RS20125 0.11 +0.6 3,832,788 - LU632_RS20125 0.18 -2.0 3,832,925 + LU632_RS20125 0.33 -0.3 3,832,966 + LU632_RS20125 0.37 +0.1 3,832,967 - LU632_RS20125 0.37 -3.8 3,832,982 + LU632_RS20125 0.39 -2.6 3,832,992 - LU632_RS20125 0.40 -2.3 3,833,282 + LU632_RS20125 0.71 +0.5 3,833,543 - -2.2 3,833,555 + +0.5 3,833,597 - +2.0 3,833,616 + -1.9 3,833,617 - -1.8
Or see this region's nucleotide sequence