Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19260

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,642,412	+		LU632_RS19255	0.58	+0.3
3,642,465	+		LU632_RS19255	0.63	+0.1
3,642,465	+		LU632_RS19255	0.63	+1.6
3,642,470	+		LU632_RS19255	0.64	+0.7
3,642,494	+		LU632_RS19255	0.66	+0.1
3,642,494	+		LU632_RS19255	0.66	-2.1
3,642,495	-		LU632_RS19255	0.66	-2.7
3,642,538	+		LU632_RS19255	0.70	-2.3
3,642,538	+		LU632_RS19255	0.70	-0.5
3,642,540	+		LU632_RS19255	0.70	+2.2
3,642,541	-		LU632_RS19255	0.70	+1.3
3,642,541	-		LU632_RS19255	0.70	+0.4
3,642,541	-		LU632_RS19255	0.70	+0.7
3,642,541	-		LU632_RS19255	0.70	-1.1
3,642,541	-		LU632_RS19255	0.70	-0.3
3,642,596	+		LU632_RS19255	0.75	+5.0
3,642,659	-		LU632_RS19255	0.81	-1.9
3,642,687	-		LU632_RS19255	0.83	-0.3
3,642,687	-		LU632_RS19255	0.83	-1.5
3,642,690	-		LU632_RS19255	0.83	-0.2
3,642,690	-		LU632_RS19255	0.83	+0.7
3,642,707	+		LU632_RS19255	0.85	-1.9
3,642,707	+		LU632_RS19255	0.85	-0.5
3,642,708	-		LU632_RS19255	0.85	+2.1
3,642,716	+		LU632_RS19255	0.86	-1.7
3,642,752	-		LU632_RS19255	0.89	+2.0
3,642,912	+				+0.4
3,642,912	+				+0.7
3,642,913	-				+1.9
3,642,913	-				-1.1
3,643,098	-				-0.4
3,643,112	-				+2.5
3,643,230	+				+0.7
3,643,231	-				-1.7
3,643,268	+				+0.5
3,643,269	-				+3.4
3,643,269	-				-1.2
3,643,271	+				-0.2
3,643,271	+				-0.1
3,643,272	-				+1.7
3,643,274	-				+2.8
3,643,464	-	panM	LU632_RS19260	0.52	-0.1
3,643,572	+	panM	LU632_RS19260	0.79	-1.5
3,643,574	+	panM	LU632_RS19260	0.79	-1.3
3,643,575	-	panM	LU632_RS19260	0.80	+0.2
3,643,598	+	panM	LU632_RS19260	0.85	+2.9
3,643,694	-				+0.2
3,643,761	+				-1.1
3,643,762	-				+0.6
3,644,644	-				+0.3