Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18995

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,585,258	+				-2.7
3,585,259	-				+0.0
3,585,259	-				+1.0
3,585,259	-				-1.6
3,585,277	+				+0.4
3,585,278	-				+1.4
3,585,289	+				-1.4
3,585,294	-				+2.4
3,585,463	-				-0.7
3,585,551	+				-0.1
3,585,552	-				+1.2
3,585,616	+				-1.1
3,585,617	-				-1.4
3,585,775	+	proC	LU632_RS18995	0.24	-0.9
3,585,840	+	proC	LU632_RS18995	0.32	-1.5
3,585,850	+	proC	LU632_RS18995	0.33	-2.3
3,585,986	-	proC	LU632_RS18995	0.50	-2.4
3,586,112	+	proC	LU632_RS18995	0.66	-2.9
3,586,120	+	proC	LU632_RS18995	0.67	+1.8
3,586,357	+				+2.6
3,586,357	+				+0.5
3,586,358	-				+0.3
3,586,451	+				-0.3
3,586,578	+				+2.2
3,586,650	+				-3.4
3,586,654	+				+2.3
3,586,655	-				+1.6
3,586,756	-				+1.7
3,586,756	-				+1.7
3,586,787	-				-0.0
3,586,787	-				-2.4
3,586,840	-				+2.8
3,586,861	-				-1.3
3,586,873	+				-1.2
3,586,874	-				+1.1
3,586,883	+				-0.7
3,587,041	+		LU632_RS19000	0.76	-3.5
3,587,064	+		LU632_RS19000	0.87	-0.2
3,587,064	+		LU632_RS19000	0.87	+1.9
3,587,069	-		LU632_RS19000	0.89	-1.5
3,587,069	-		LU632_RS19000	0.89	-0.7
3,587,076	+				+0.9
3,587,236	+				-2.7
3,587,236	+				+7.8
3,587,237	-				+2.3
3,587,302	+				+2.9
3,587,337	-				-0.9
3,587,339	+				-0.1
3,587,340	-				-0.9
3,587,377	+				+1.2
3,587,377	+				+1.3