Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18545

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,505,103	+		LU632_RS18535	0.77	-1.2
3,505,103	+		LU632_RS18535	0.77	-2.3
3,505,174	+		LU632_RS18535	0.80	+0.3
3,505,181	-		LU632_RS18535	0.81	+0.6
3,505,186	+		LU632_RS18535	0.81	+1.0
3,505,366	+		LU632_RS18535	0.90	-1.0
3,505,366	-		LU632_RS18535	0.90	+0.7
3,505,568	+				+1.2
3,505,568	+				+0.6
3,505,569	-				-0.4
3,505,596	-				+0.5
3,505,596	-				-2.1
3,505,607	+				+0.0
3,505,607	+				-1.0
3,505,665	-		LU632_RS18540	0.20	-0.4
3,505,775	+		LU632_RS18540	0.46	+0.8
3,505,790	+		LU632_RS18540	0.50	-1.6
3,505,791	-		LU632_RS18540	0.50	-1.1
3,505,791	-		LU632_RS18540	0.50	-0.8
3,505,796	+		LU632_RS18540	0.51	+0.2
3,505,834	-		LU632_RS18540	0.60	-3.0
3,505,958	-		LU632_RS18540	0.90	+2.4
3,505,980	-				+0.7
3,506,011	+				+1.6
3,506,012	-				-1.5
3,506,012	-				-0.2
3,506,013	+				-0.4
3,506,016	+				+0.9
3,506,045	+				-1.7
3,506,045	+				-0.4
3,506,109	+				+2.1
3,506,158	-				-2.4
3,506,158	-				-1.6
3,506,296	-				+1.1
3,506,346	-				+1.1
3,506,458	-				-0.0
3,506,599	+		LU632_RS18545	0.12	-3.2
3,506,600	-		LU632_RS18545	0.12	+0.2
3,506,805	+		LU632_RS18545	0.17	-1.0
3,506,808	+		LU632_RS18545	0.17	-0.5
3,506,809	-		LU632_RS18545	0.17	+1.2
3,506,871	+		LU632_RS18545	0.19	+0.2
3,506,872	-		LU632_RS18545	0.19	+0.6
3,506,872	-		LU632_RS18545	0.19	-0.5
3,506,872	-		LU632_RS18545	0.19	-1.4
3,506,934	+		LU632_RS18545	0.20	+2.0
3,506,935	-		LU632_RS18545	0.20	-2.0
3,506,935	-		LU632_RS18545	0.20	+0.8
3,507,103	+		LU632_RS18545	0.24	-1.2
3,507,103	+		LU632_RS18545	0.24	-1.2
3,507,104	-		LU632_RS18545	0.24	+0.4
3,507,370	+		LU632_RS18545	0.30	+1.2
3,507,370	+		LU632_RS18545	0.30	-1.3
3,507,371	-		LU632_RS18545	0.30	-0.2
3,507,371	-		LU632_RS18545	0.30	-2.4
3,507,434	-		LU632_RS18545	0.31	-0.7
3,507,531	+		LU632_RS18545	0.33	-3.7
3,507,532	-		LU632_RS18545	0.33	+0.6
3,507,557	-		LU632_RS18545	0.34	+2.9
3,507,604	+		LU632_RS18545	0.35	+4.1
3,507,605	-		LU632_RS18545	0.35	-3.5
3,507,666	+		LU632_RS18545	0.36	-1.2
3,507,667	-		LU632_RS18545	0.36	-0.4
3,507,682	+		LU632_RS18545	0.37	-3.5
3,507,682	+		LU632_RS18545	0.37	-0.9
3,507,768	+		LU632_RS18545	0.39	-0.7
3,507,775	+		LU632_RS18545	0.39	-1.7
3,507,804	-		LU632_RS18545	0.40	-0.4
3,507,837	-		LU632_RS18545	0.40	-2.0
3,507,914	-		LU632_RS18545	0.42	-0.3
3,507,986	-		LU632_RS18545	0.44	-1.3
3,508,093	+		LU632_RS18545	0.46	+1.0
3,508,107	-		LU632_RS18545	0.46	-1.6
3,508,111	+		LU632_RS18545	0.47	-3.4
3,508,123	+		LU632_RS18545	0.47	+2.6
3,508,126	-		LU632_RS18545	0.47	-0.4
3,508,126	-		LU632_RS18545	0.47	+2.2
3,508,182	+		LU632_RS18545	0.48	-2.0
3,508,231	+		LU632_RS18545	0.49	-1.6
3,508,231	+		LU632_RS18545	0.49	-0.4
3,508,232	-		LU632_RS18545	0.49	-0.4
3,508,289	-		LU632_RS18545	0.51	-0.4
3,508,294	+		LU632_RS18545	0.51	+2.5
3,508,294	+		LU632_RS18545	0.51	+0.1
3,508,295	-		LU632_RS18545	0.51	+0.6
3,508,313	+		LU632_RS18545	0.51	+0.6
3,508,355	-		LU632_RS18545	0.52	+0.6
3,508,355	-		LU632_RS18545	0.52	+0.7
3,508,360	+		LU632_RS18545	0.52	-1.0
3,508,361	-		LU632_RS18545	0.52	-0.3
3,508,361	-		LU632_RS18545	0.52	+0.8
3,508,361	-		LU632_RS18545	0.52	+3.3
3,508,362	+		LU632_RS18545	0.52	-0.9
3,508,362	+		LU632_RS18545	0.52	-0.5
3,508,362	+		LU632_RS18545	0.52	+0.4
3,508,362	+		LU632_RS18545	0.52	+0.1
3,508,363	-		LU632_RS18545	0.52	-1.2
3,508,363	-		LU632_RS18545	0.52	-1.0
3,508,363	-		LU632_RS18545	0.52	+0.2
3,508,363	-		LU632_RS18545	0.52	-2.1
3,508,363	-		LU632_RS18545	0.52	+0.2
3,508,363	-		LU632_RS18545	0.52	-0.1
3,508,366	+		LU632_RS18545	0.52	+0.6
3,508,366	+		LU632_RS18545	0.52	-0.7
3,508,367	-		LU632_RS18545	0.52	-0.4
3,508,423	+		LU632_RS18545	0.54	-1.0
3,508,424	-		LU632_RS18545	0.54	-0.0
3,508,450	-		LU632_RS18545	0.54	+1.6
3,508,614	+		LU632_RS18545	0.58	+2.6
3,508,614	+		LU632_RS18545	0.58	-1.4
3,508,615	-		LU632_RS18545	0.58	-0.0
3,508,615	-		LU632_RS18545	0.58	-0.2
3,508,615	-		LU632_RS18545	0.58	+0.2
3,508,615	-		LU632_RS18545	0.58	-1.1
3,508,762	+		LU632_RS18545	0.61	-0.2
3,508,763	-		LU632_RS18545	0.61	+3.7
3,508,763	-		LU632_RS18545	0.61	+5.0
3,508,798	+		LU632_RS18545	0.62	+3.4
3,508,799	-		LU632_RS18545	0.62	-0.4
3,508,827	+		LU632_RS18545	0.63	-1.0
3,508,827	+		LU632_RS18545	0.63	+0.7
3,508,861	+		LU632_RS18545	0.63	+1.5
3,508,862	-		LU632_RS18545	0.63	-0.0
3,508,923	+		LU632_RS18545	0.65	+1.4
3,508,924	-		LU632_RS18545	0.65	+0.1
3,508,927	+		LU632_RS18545	0.65	+0.6
3,508,927	+		LU632_RS18545	0.65	+0.6
3,508,928	-		LU632_RS18545	0.65	+1.3
3,508,928	-		LU632_RS18545	0.65	-0.6
3,508,928	-		LU632_RS18545	0.65	+1.6
3,509,053	+		LU632_RS18545	0.68	+0.1
3,509,056	-		LU632_RS18545	0.68	-2.1
3,509,104	+		LU632_RS18545	0.69	+3.2
3,509,104	+		LU632_RS18545	0.69	+1.8
3,509,104	+		LU632_RS18545	0.69	+1.1
3,509,104	+		LU632_RS18545	0.69	-1.6
3,509,104	+		LU632_RS18545	0.69	+2.0
3,509,105	-		LU632_RS18545	0.69	-2.0
3,509,105	-		LU632_RS18545	0.69	+1.2
3,509,105	-		LU632_RS18545	0.69	+0.7
3,509,105	-		LU632_RS18545	0.69	+1.4
3,509,174	-		LU632_RS18545	0.71	+1.3
3,509,227	+		LU632_RS18545	0.72	+0.9
3,509,227	+		LU632_RS18545	0.72	+2.2
3,509,270	-		LU632_RS18545	0.73	-0.4
3,509,271	+		LU632_RS18545	0.73	+1.4
3,509,272	-		LU632_RS18545	0.73	-0.4
3,509,272	-		LU632_RS18545	0.73	-0.9
3,509,295	+		LU632_RS18545	0.73	+1.2
3,509,320	-		LU632_RS18545	0.74	-1.5
3,509,381	-		LU632_RS18545	0.75	-1.8
3,509,428	-		LU632_RS18545	0.76	-0.0
3,509,440	+		LU632_RS18545	0.77	-2.4
3,509,526	-		LU632_RS18545	0.78	+0.9
3,509,561	-		LU632_RS18545	0.79	-1.6
3,509,616	-		LU632_RS18545	0.80	-3.7
3,509,628	-		LU632_RS18545	0.81	-0.3
3,509,701	+		LU632_RS18545	0.82	+3.0
3,509,701	+		LU632_RS18545	0.82	-0.0
3,509,726	-		LU632_RS18545	0.83	-2.4
3,509,749	-		LU632_RS18545	0.83	+0.1
3,509,755	+		LU632_RS18545	0.84	-0.4
3,509,756	-		LU632_RS18545	0.84	-1.0
3,509,803	+		LU632_RS18545	0.85	+1.6
3,509,804	-		LU632_RS18545	0.85	-0.0
3,509,864	+		LU632_RS18545	0.86	+1.1
3,509,866	+		LU632_RS18545	0.86	-0.1
3,509,866	+		LU632_RS18545	0.86	+0.6
3,509,866	+		LU632_RS18545	0.86	-1.0
3,509,866	+		LU632_RS18545	0.86	-1.0
3,509,866	+		LU632_RS18545	0.86	-1.0
3,509,866	+		LU632_RS18545	0.86	+1.2
3,509,867	-		LU632_RS18545	0.86	-0.6
3,509,867	-		LU632_RS18545	0.86	-1.0
3,509,867	-		LU632_RS18545	0.86	-2.0
3,509,867	-		LU632_RS18545	0.86	-1.0
3,509,867	-		LU632_RS18545	0.86	-2.2
3,509,867	-		LU632_RS18545	0.86	-1.6
3,509,867	-		LU632_RS18545	0.86	+1.3
3,509,872	+		LU632_RS18545	0.86	-0.4
3,509,872	+		LU632_RS18545	0.86	+1.1
3,509,937	+		LU632_RS18545	0.88	-0.4
3,509,937	+		LU632_RS18545	0.88	-0.4
3,509,937	+		LU632_RS18545	0.88	-0.8
3,509,938	-		LU632_RS18545	0.88	-1.4
3,509,941	+		LU632_RS18545	0.88	-0.1
3,509,941	+		LU632_RS18545	0.88	-2.7
3,509,941	+		LU632_RS18545	0.88	-0.6
3,509,941	+		LU632_RS18545	0.88	+0.3
3,509,942	-		LU632_RS18545	0.88	-0.7
3,510,018	+		LU632_RS18545	0.90	-1.5
3,510,018	+		LU632_RS18545	0.90	-0.9
3,510,019	-		LU632_RS18545	0.90	-0.6
3,510,019	-		LU632_RS18545	0.90	+1.7
3,510,117	+				+3.8
3,510,117	+				+1.8
3,510,118	+				+5.0
3,510,146	-				+0.7
3,510,184	+				-3.5
3,510,184	+				+1.0
3,510,185	-				+1.5
3,510,185	-				+0.8
3,510,185	-				+2.0
3,510,185	-				-0.2
3,510,352	+				-0.9
3,510,353	-				-2.6
3,510,353	-				+2.3
3,510,373	+				-1.3
3,510,373	+				-1.2
3,510,377	+				+0.2
3,510,418	+				+1.9
3,510,420	+				-0.2
3,510,420	+				-0.2
3,510,420	+				-0.3
3,510,420	+				+1.0
3,510,421	+				+1.4
3,510,421	-				-0.6
3,510,421	-				-0.4
3,510,421	-				+0.2
3,510,421	-				-2.4
3,510,424	+				+0.2
3,510,425	-				-0.5
3,510,479	-				-0.6
3,510,479	-				+0.4