Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18450

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,486,314	+	hutX	LU632_RS18440	0.79	-0.6
3,486,315	-	hutX	LU632_RS18440	0.79	-2.0
3,486,413	+				-0.1
3,486,417	+				-1.8
3,486,417	+				+4.5
3,486,436	-				-0.1
3,486,565	+		LU632_RS18445	0.23	-1.4
3,486,565	+		LU632_RS18445	0.23	+0.9
3,486,566	-		LU632_RS18445	0.24	-1.1
3,486,566	-		LU632_RS18445	0.24	+0.1
3,486,566	-		LU632_RS18445	0.24	-0.3
3,486,568	-		LU632_RS18445	0.24	+1.1
3,486,668	+		LU632_RS18445	0.40	+2.9
3,486,668	+		LU632_RS18445	0.40	+0.9
3,486,882	+		LU632_RS18445	0.74	-0.1
3,486,883	-		LU632_RS18445	0.74	-0.3
3,486,923	-		LU632_RS18445	0.81	-2.3
3,487,007	+				-1.5
3,487,040	+				+0.3
3,487,043	+				+0.2
3,487,044	-				+1.0
3,487,044	-				-1.1
3,487,315	+		LU632_RS18450	0.46	-1.0
3,487,439	+		LU632_RS18450	0.71	+1.6
3,487,467	+		LU632_RS18450	0.76	+0.2
3,487,467	+		LU632_RS18450	0.76	+0.3
3,487,467	+		LU632_RS18450	0.76	-1.7
3,487,588	-				-0.7
3,487,616	+				+1.4
3,487,628	-				+0.4
3,487,661	+				+0.8
3,487,662	-				-0.3
3,487,696	-				-0.2
3,487,716	+				+2.2
3,487,728	-				-1.4
3,487,729	+				+1.0
3,487,730	-				+1.6
3,487,730	-				-2.4
3,487,730	-				-1.6
3,487,925	+	panE	LU632_RS18455	0.18	-2.0
3,488,042	-	panE	LU632_RS18455	0.31	-0.4
3,488,042	-	panE	LU632_RS18455	0.31	+0.6
3,488,042	-	panE	LU632_RS18455	0.31	+1.2
3,488,172	-	panE	LU632_RS18455	0.45	-1.2
3,488,259	-	panE	LU632_RS18455	0.54	-2.6
3,488,325	+	panE	LU632_RS18455	0.62	+0.6
3,488,325	+	panE	LU632_RS18455	0.62	+0.0
3,488,325	+	panE	LU632_RS18455	0.62	-0.3
3,488,440	+	panE	LU632_RS18455	0.74	+0.1
3,488,441	-	panE	LU632_RS18455	0.74	+2.0
3,488,445	+	panE	LU632_RS18455	0.75	-1.8
3,488,445	+	panE	LU632_RS18455	0.75	+0.6
3,488,533	-	panE	LU632_RS18455	0.84	-1.8
3,488,533	-	panE	LU632_RS18455	0.84	+0.6
3,488,534	+	panE	LU632_RS18455	0.84	+0.6
3,488,534	+	panE	LU632_RS18455	0.84	+1.8
3,488,535	-	panE	LU632_RS18455	0.84	+0.3
3,488,544	+	panE	LU632_RS18455	0.85	+1.0