Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18355

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,468,069	+	tig	LU632_RS18350	0.76	-2.5
3,468,091	+	tig	LU632_RS18350	0.78	-1.1
3,468,091	+	tig	LU632_RS18350	0.78	-2.8
3,468,092	-	tig	LU632_RS18350	0.78	-0.8
3,468,094	-	tig	LU632_RS18350	0.78	-1.8
3,468,108	+	tig	LU632_RS18350	0.79	-3.6
3,468,108	+	tig	LU632_RS18350	0.79	-0.9
3,468,109	-	tig	LU632_RS18350	0.79	-2.3
3,468,164	-	tig	LU632_RS18350	0.83	-1.4
3,468,299	-				-0.7
3,468,386	-				-2.1
3,468,390	-				+1.5
3,468,550	+				+0.9
3,468,653	+				+1.0
3,468,701	-				+0.6
3,468,701	-				+1.0
3,470,086	+				-1.7
3,470,086	+				-2.5
3,470,121	+				-2.3
3,470,122	-				-0.5
3,470,216	+	bolA	LU632_RS18360	0.26	-1.1
3,470,217	-	bolA	LU632_RS18360	0.27	-1.0
3,470,217	-	bolA	LU632_RS18360	0.27	-1.5
3,470,269	+	bolA	LU632_RS18360	0.43	+1.8
3,470,270	-	bolA	LU632_RS18360	0.43	+0.9
3,470,333	+	bolA	LU632_RS18360	0.63	-3.3
3,470,334	-	bolA	LU632_RS18360	0.64	+0.5
3,470,447	+				+0.8
3,470,454	-				-0.6
3,470,500	+				+0.3
3,470,501	-				+0.1
3,470,558	+				+0.8
3,470,593	+				-3.2
3,470,610	+				-2.7
3,470,701	+		LU632_RS18365	0.15	+0.5
3,470,731	+		LU632_RS18365	0.20	-2.5
3,470,815	-		LU632_RS18365	0.35	-0.2
3,470,891	+		LU632_RS18365	0.48	+0.3
3,470,892	-		LU632_RS18365	0.48	-0.7
3,470,945	+		LU632_RS18365	0.57	-1.3
3,470,945	+		LU632_RS18365	0.57	-1.0
3,470,946	-		LU632_RS18365	0.57	+2.7
3,470,946	-		LU632_RS18365	0.57	+0.1
3,470,946	-		LU632_RS18365	0.57	+0.8
3,470,946	-		LU632_RS18365	0.57	+0.4
3,470,980	+		LU632_RS18365	0.63	-1.8
3,470,981	-		LU632_RS18365	0.63	-0.5
3,470,981	-		LU632_RS18365	0.63	-0.4
3,470,999	-		LU632_RS18365	0.66	-2.5