Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18110

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,421,995	+	htpG	LU632_RS18100	0.85	+1.1
3,422,043	+	htpG	LU632_RS18100	0.88	+2.3
3,422,044	-	htpG	LU632_RS18100	0.88	+1.1
3,422,265	+				-0.0
3,422,289	+				-1.0
3,422,299	-				+1.5
3,422,302	-				+0.7
3,422,511	+	recR	LU632_RS18105	0.23	+1.1
3,422,511	+	recR	LU632_RS18105	0.23	+1.2
3,422,511	+	recR	LU632_RS18105	0.23	-0.2
3,422,511	+	recR	LU632_RS18105	0.23	+1.9
3,422,512	-	recR	LU632_RS18105	0.23	-1.0
3,422,512	-	recR	LU632_RS18105	0.23	-1.5
3,422,512	-	recR	LU632_RS18105	0.23	-1.2
3,422,516	-	recR	LU632_RS18105	0.24	-1.6
3,422,665	-	recR	LU632_RS18105	0.48	-1.5
3,422,768	-	recR	LU632_RS18105	0.65	+0.1
3,423,236	-		LU632_RS18110	0.78	+1.5
3,423,306	+				-1.0
3,423,306	+				+1.2
3,423,307	-				+0.4
3,423,307	-				-3.6
3,423,307	-				+0.5