Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17700

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,323,895	+	tssK	LU632_RS17695	0.35	+1.5
3,323,895	+	tssK	LU632_RS17695	0.35	+0.5
3,323,896	-	tssK	LU632_RS17695	0.35	+2.7
3,323,896	-	tssK	LU632_RS17695	0.35	-0.6
3,323,994	+	tssK	LU632_RS17695	0.42	-1.5
3,324,142	-	tssK	LU632_RS17695	0.53	+0.5
3,324,155	+	tssK	LU632_RS17695	0.54	+2.1
3,324,156	-	tssK	LU632_RS17695	0.54	-1.1
3,324,156	-	tssK	LU632_RS17695	0.54	-2.3
3,324,156	-	tssK	LU632_RS17695	0.54	-1.8
3,324,156	-	tssK	LU632_RS17695	0.54	-0.1
3,324,198	-	tssK	LU632_RS17695	0.57	-0.5
3,324,301	+	tssK	LU632_RS17695	0.65	+0.2
3,324,302	-	tssK	LU632_RS17695	0.65	+2.2
3,324,303	+	tssK	LU632_RS17695	0.65	+2.4
3,324,394	-	tssK	LU632_RS17695	0.72	-0.7
3,324,394	-	tssK	LU632_RS17695	0.72	-1.4
3,324,555	+	tssK	LU632_RS17695	0.83	+1.4
3,324,555	+	tssK	LU632_RS17695	0.83	-0.5
3,324,555	+	tssK	LU632_RS17695	0.83	-0.2
3,324,556	-	tssK	LU632_RS17695	0.84	-1.1
3,324,556	-	tssK	LU632_RS17695	0.84	-1.5
3,324,644	-				-3.5
3,324,644	-				+1.8
3,324,645	+				+1.8
3,324,645	+				-2.2
3,324,645	+				+0.5
3,324,646	-				-0.1
3,324,646	-				+0.9
3,324,646	-				-0.8
3,324,646	-				-2.6
3,324,646	-				-2.1
3,324,646	-				+0.9
3,324,650	-				+2.8
3,324,650	-				-3.5
3,324,788	-				+2.5
3,324,832	+				+1.0
3,324,866	+	icmH	LU632_RS17700	0.12	+1.4
3,324,867	-	icmH	LU632_RS17700	0.12	+0.8
3,324,869	+	icmH	LU632_RS17700	0.12	+0.3
3,324,870	-	icmH	LU632_RS17700	0.12	+2.5
3,324,924	-	icmH	LU632_RS17700	0.19	+0.5
3,324,958	-	icmH	LU632_RS17700	0.24	+3.3
3,324,997	+	icmH	LU632_RS17700	0.29	-0.0
3,325,014	+	icmH	LU632_RS17700	0.31	-1.0
3,325,015	-	icmH	LU632_RS17700	0.31	-0.7
3,325,055	+	icmH	LU632_RS17700	0.36	+0.4
3,325,167	+	icmH	LU632_RS17700	0.51	+0.9
3,325,167	+	icmH	LU632_RS17700	0.51	+0.3
3,325,167	+	icmH	LU632_RS17700	0.51	+2.4
3,325,263	+	icmH	LU632_RS17700	0.63	-0.3
3,325,265	+	icmH	LU632_RS17700	0.63	-2.3
3,325,266	-	icmH	LU632_RS17700	0.63	+0.8
3,325,266	-	icmH	LU632_RS17700	0.63	-0.5
3,325,317	+	icmH	LU632_RS17700	0.70	+0.3
3,325,318	-	icmH	LU632_RS17700	0.70	+0.2
3,325,319	+	icmH	LU632_RS17700	0.70	-1.8
3,325,531	+				-1.5
3,325,531	+				-2.8
3,325,675	-				+1.6
3,325,763	-				-0.2
3,325,928	+	tssH	LU632_RS17705	0.15	-2.8
3,325,929	-	tssH	LU632_RS17705	0.15	+0.5
3,325,929	-	tssH	LU632_RS17705	0.15	-0.7
3,325,929	-	tssH	LU632_RS17705	0.15	-0.7
3,325,961	-	tssH	LU632_RS17705	0.16	-1.1
3,326,060	-	tssH	LU632_RS17705	0.20	-0.8
3,326,181	+	tssH	LU632_RS17705	0.24	+1.6
3,326,182	-	tssH	LU632_RS17705	0.24	-1.1
3,326,182	-	tssH	LU632_RS17705	0.24	+0.7
3,326,400	+	tssH	LU632_RS17705	0.33	+1.3
3,326,401	-	tssH	LU632_RS17705	0.33	-1.1