Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17185

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17180 and LU632_RS17185 overlap by 47 nucleotidesLU632_RS17185 and LU632_RS17190 are separated by 185 nucleotidesLU632_RS17190 and LU632_RS17195 are separated by 34 nucleotides LU632_RS17180: LU632_RS17180 - phage terminase large subunit family protein, at 3,232,241 to 3,234,211 _RS17180 LU632_RS17185: LU632_RS17185 - RNA polymerase subunit sigma-70, at 3,234,165 to 3,234,770 _RS17185 LU632_RS17190: LU632_RS17190 - hypothetical protein, at 3,234,956 to 3,235,183 _RS17190 LU632_RS17195: LU632_RS17195 - IS481 family transposase, at 3,235,218 to 3,236,258 _RS17195 Position (kb) 3234 3235Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3233.371 kb on - strand, within LU632_RS17180at 3233.373 kb on + strand, within LU632_RS17180at 3233.373 kb on + strand, within LU632_RS17180at 3233.374 kb on - strand, within LU632_RS17180at 3233.374 kb on - strand, within LU632_RS17180at 3233.463 kb on + strand, within LU632_RS17180at 3233.539 kb on + strand, within LU632_RS17180at 3233.540 kb on - strand, within LU632_RS17180at 3233.678 kb on + strand, within LU632_RS17180at 3233.679 kb on - strand, within LU632_RS17180at 3233.692 kb on + strand, within LU632_RS17180at 3233.692 kb on + strand, within LU632_RS17180at 3233.807 kb on - strand, within LU632_RS17180at 3233.825 kb on - strand, within LU632_RS17180at 3233.854 kb on + strand, within LU632_RS17180at 3233.859 kb on + strand, within LU632_RS17180at 3233.859 kb on + strand, within LU632_RS17180at 3233.860 kb on - strand, within LU632_RS17180at 3233.860 kb on - strand, within LU632_RS17180at 3233.900 kb on - strand, within LU632_RS17180at 3233.900 kb on - strand, within LU632_RS17180at 3234.094 kb on + strandat 3234.094 kb on + strandat 3234.143 kb on - strandat 3234.166 kb on + strandat 3234.212 kb on + strandat 3234.213 kb on - strandat 3234.340 kb on + strand, within LU632_RS17185at 3234.341 kb on - strand, within LU632_RS17185at 3234.360 kb on + strand, within LU632_RS17185at 3234.361 kb on - strand, within LU632_RS17185at 3234.361 kb on - strand, within LU632_RS17185at 3234.431 kb on - strand, within LU632_RS17185at 3234.560 kb on + strand, within LU632_RS17185at 3234.561 kb on - strand, within LU632_RS17185at 3234.597 kb on - strand, within LU632_RS17185at 3234.887 kb on + strandat 3234.888 kb on - strandat 3234.890 kb on - strandat 3234.953 kb on + strandat 3234.953 kb on + strandat 3234.953 kb on + strandat 3234.954 kb on - strandat 3234.954 kb on - strandat 3234.956 kb on - strandat 3234.974 kb on + strandat 3234.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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3,233,371 - LU632_RS17180 0.57 +1.1
3,233,373 + LU632_RS17180 0.57 -0.5
3,233,373 + LU632_RS17180 0.57 +0.9
3,233,374 - LU632_RS17180 0.57 -1.2
3,233,374 - LU632_RS17180 0.57 +3.1
3,233,463 + LU632_RS17180 0.62 +1.4
3,233,539 + LU632_RS17180 0.66 +0.9
3,233,540 - LU632_RS17180 0.66 -0.9
3,233,678 + LU632_RS17180 0.73 +0.3
3,233,679 - LU632_RS17180 0.73 -0.2
3,233,692 + LU632_RS17180 0.74 -0.3
3,233,692 + LU632_RS17180 0.74 +0.4
3,233,807 - LU632_RS17180 0.79 -1.1
3,233,825 - LU632_RS17180 0.80 +0.8
3,233,854 + LU632_RS17180 0.82 -0.5
3,233,859 + LU632_RS17180 0.82 -0.5
3,233,859 + LU632_RS17180 0.82 +2.9
3,233,860 - LU632_RS17180 0.82 +2.3
3,233,860 - LU632_RS17180 0.82 -0.5
3,233,900 - LU632_RS17180 0.84 -0.3
3,233,900 - LU632_RS17180 0.84 +0.9
3,234,094 + +1.8
3,234,094 + +0.1
3,234,143 - +0.5
3,234,166 + -0.3
3,234,212 + +1.2
3,234,213 - +1.4
3,234,340 + LU632_RS17185 0.29 -2.2
3,234,341 - LU632_RS17185 0.29 -0.8
3,234,360 + LU632_RS17185 0.32 +0.5
3,234,361 - LU632_RS17185 0.32 -0.8
3,234,361 - LU632_RS17185 0.32 +1.4
3,234,431 - LU632_RS17185 0.44 +2.5
3,234,560 + LU632_RS17185 0.65 +0.1
3,234,561 - LU632_RS17185 0.65 -1.1
3,234,597 - LU632_RS17185 0.71 -2.5
3,234,887 + +0.7
3,234,888 - -1.0
3,234,890 - -0.6
3,234,953 + -4.0
3,234,953 + +1.5
3,234,953 + +1.3
3,234,954 - -0.8
3,234,954 - -1.7
3,234,956 - -0.6
3,234,974 + +1.8
3,234,975 - -3.1

Or see this region's nucleotide sequence