Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17115

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,223,016	+		LU632_RS17110	0.69	-1.6
3,223,016	+		LU632_RS17110	0.69	-2.5
3,223,016	+		LU632_RS17110	0.69	+0.7
3,223,016	+		LU632_RS17110	0.69	-0.3
3,223,017	-		LU632_RS17110	0.69	+2.6
3,223,023	+		LU632_RS17110	0.70	+0.0
3,223,100	-		LU632_RS17110	0.74	-0.5
3,223,182	+		LU632_RS17110	0.78	-1.5
3,223,190	+		LU632_RS17110	0.78	+0.1
3,223,190	+		LU632_RS17110	0.78	+0.5
3,223,257	+		LU632_RS17110	0.82	-1.8
3,223,258	-		LU632_RS17110	0.82	-1.7
3,223,286	-		LU632_RS17110	0.84	-2.1
3,223,395	-		LU632_RS17110	0.89	+0.5
3,223,395	-		LU632_RS17110	0.89	-0.8
3,223,433	+				+0.1
3,223,636	-				-0.9
3,223,637	+				+1.5
3,223,700	+				+2.8
3,223,844	+		LU632_RS17115	0.43	-1.0
3,223,931	+		LU632_RS17115	0.71	-1.7
3,224,021	+				+3.9
3,224,021	+				+0.2
3,224,021	+				-0.2
3,224,190	+		LU632_RS17120	0.47	+1.0
3,224,234	+		LU632_RS17120	0.59	+0.5
3,224,235	-		LU632_RS17120	0.60	-1.2
3,224,325	+		LU632_RS17120	0.85	-0.8
3,224,325	+		LU632_RS17120	0.85	+0.7
3,224,325	+		LU632_RS17120	0.85	+2.8
3,224,326	-		LU632_RS17120	0.85	-2.3
3,224,379	+				+1.0
3,224,380	-				+2.2
3,224,615	-		LU632_RS17125	0.15	+0.2
3,224,711	+		LU632_RS17125	0.21	-1.5
3,224,711	+		LU632_RS17125	0.21	+1.0
3,224,744	+		LU632_RS17125	0.23	-1.4
3,224,744	+		LU632_RS17125	0.23	-0.5
3,224,744	+		LU632_RS17125	0.23	-0.4
3,224,744	+		LU632_RS17125	0.23	-0.5
3,224,765	+		LU632_RS17125	0.24	+0.9
3,224,780	+		LU632_RS17125	0.25	-0.1
3,224,915	-		LU632_RS17125	0.34	-2.1
3,225,017	+		LU632_RS17125	0.41	+2.5
3,225,017	+		LU632_RS17125	0.41	+0.0
3,225,018	-		LU632_RS17125	0.41	-1.9
3,225,018	-		LU632_RS17125	0.41	+0.5
3,225,018	-		LU632_RS17125	0.41	+0.3