Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16615

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,140,416	+		LU632_RS16610	0.57	-0.8
3,140,417	-		LU632_RS16610	0.57	+3.6
3,140,422	+		LU632_RS16610	0.57	-0.0
3,140,425	+		LU632_RS16610	0.58	-1.8
3,140,425	+		LU632_RS16610	0.58	+0.6
3,140,537	+		LU632_RS16610	0.69	+0.2
3,140,538	-		LU632_RS16610	0.69	+0.1
3,140,541	-		LU632_RS16610	0.70	+0.7
3,140,541	-		LU632_RS16610	0.70	+0.8
3,140,541	-		LU632_RS16610	0.70	-1.7
3,140,541	-		LU632_RS16610	0.70	+0.5
3,140,541	-		LU632_RS16610	0.70	+1.8
3,140,541	-		LU632_RS16610	0.70	-1.3
3,140,543	+		LU632_RS16610	0.70	+0.3
3,140,544	-		LU632_RS16610	0.70	-1.2
3,140,698	+		LU632_RS16610	0.86	+1.1
3,140,765	+				-2.5
3,140,766	-				+0.1
3,140,860	-				-0.2
3,140,922	-				+3.9
3,140,942	+				+2.3
3,140,942	+				-2.1
3,140,988	+				+0.1
3,141,032	-				+0.5
3,141,040	+				-0.2
3,141,094	-				-0.6
3,141,147	+				+0.6
3,141,153	-				-1.9
3,141,157	+				+2.6
3,141,261	-				-1.3
3,141,306	+				+1.8
3,141,308	+				-0.5
3,141,309	-				-3.2
3,141,355	+				+0.4
3,141,382	-				+2.2
3,141,398	+				-0.5
3,141,418	+		LU632_RS16615	0.16	-1.7
3,141,419	-		LU632_RS16615	0.16	+0.5
3,141,620	-		LU632_RS16615	0.76	-4.5
3,141,620	-		LU632_RS16615	0.76	-1.4
3,141,653	+		LU632_RS16615	0.86	+0.3
3,141,654	-		LU632_RS16615	0.86	+0.5
3,141,684	+				-0.0
3,141,684	+				+0.1
3,141,690	-				-0.3
3,141,745	-				+1.5
3,141,748	-				-0.2
3,141,749	+				+1.1
3,141,754	+				+2.3
3,141,754	+				-1.3
3,141,755	-				-0.4
3,141,755	-				+0.2
3,141,755	-				-0.0
3,141,758	-				-2.0
3,141,784	+				-1.1
3,141,785	-				+0.7
3,141,830	-				+0.1
3,141,970	-		LU632_RS16620	0.21	-2.2
3,142,049	-		LU632_RS16620	0.28	+0.2
3,142,049	-		LU632_RS16620	0.28	+0.6
3,142,060	+		LU632_RS16620	0.29	-3.4
3,142,061	-		LU632_RS16620	0.29	-1.5
3,142,133	+		LU632_RS16620	0.36	-3.0
3,142,133	+		LU632_RS16620	0.36	+2.8
3,142,133	+		LU632_RS16620	0.36	-2.4
3,142,133	+		LU632_RS16620	0.36	+0.7
3,142,156	-		LU632_RS16620	0.38	-0.2
3,142,159	+		LU632_RS16620	0.38	+0.8
3,142,159	+		LU632_RS16620	0.38	+0.7
3,142,203	+		LU632_RS16620	0.42	+0.5
3,142,397	+		LU632_RS16620	0.60	+1.3
3,142,397	+		LU632_RS16620	0.60	-0.9
3,142,398	-		LU632_RS16620	0.60	+2.5
3,142,505	+		LU632_RS16620	0.70	-1.4
3,142,505	+		LU632_RS16620	0.70	+0.6
3,142,505	+		LU632_RS16620	0.70	+0.5
3,142,505	+		LU632_RS16620	0.70	+1.0
3,142,505	+		LU632_RS16620	0.70	+1.8
3,142,505	+		LU632_RS16620	0.70	+1.5
3,142,581	+		LU632_RS16620	0.77	+1.8
3,142,582	-		LU632_RS16620	0.77	+3.5