Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16115

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,045,813	-	sdhA	LU632_RS16105	0.63	-0.9
3,045,881	+	sdhA	LU632_RS16105	0.67	-0.0
3,046,013	-	sdhA	LU632_RS16105	0.75	-0.0
3,046,118	-	sdhA	LU632_RS16105	0.81	+0.5
3,046,118	-	sdhA	LU632_RS16105	0.81	-1.7
3,046,118	-	sdhA	LU632_RS16105	0.81	+0.5
3,046,158	-	sdhA	LU632_RS16105	0.83	-3.4
3,046,158	-	sdhA	LU632_RS16105	0.83	+1.3
3,046,194	-	sdhA	LU632_RS16105	0.85	-1.1
3,046,194	-	sdhA	LU632_RS16105	0.85	-1.0
3,046,199	+	sdhA	LU632_RS16105	0.85	-0.5
3,046,199	+	sdhA	LU632_RS16105	0.85	-1.3
3,046,200	-	sdhA	LU632_RS16105	0.85	-1.8
3,046,200	-	sdhA	LU632_RS16105	0.85	-2.3
3,046,200	-	sdhA	LU632_RS16105	0.85	+2.1
3,046,201	+	sdhA	LU632_RS16105	0.85	-1.8
3,046,248	-	sdhA	LU632_RS16105	0.88	-0.9
3,046,252	+	sdhA	LU632_RS16105	0.88	-1.9
3,046,252	+	sdhA	LU632_RS16105	0.88	-3.9
3,046,482	+				-2.9
3,046,483	-				-1.2
3,046,483	-				-4.2
3,046,505	-	sdhD	LU632_RS16110	0.12	-0.5
3,046,563	-	sdhD	LU632_RS16110	0.29	-1.5
3,046,574	-	sdhD	LU632_RS16110	0.32	-2.0
3,046,574	-	sdhD	LU632_RS16110	0.32	-0.9
3,046,634	-	sdhD	LU632_RS16110	0.49	-0.8
3,046,638	+	sdhD	LU632_RS16110	0.51	-1.3
3,046,672	-	sdhD	LU632_RS16110	0.60	-2.5
3,046,681	-	sdhD	LU632_RS16110	0.63	-1.9
3,046,715	+	sdhD	LU632_RS16110	0.73	+0.1
3,046,715	+	sdhD	LU632_RS16110	0.73	-2.2
3,046,716	-	sdhD	LU632_RS16110	0.73	-2.0
3,046,724	+	sdhD	LU632_RS16110	0.75	+0.1
3,046,724	+	sdhD	LU632_RS16110	0.75	-2.0
3,046,724	+	sdhD	LU632_RS16110	0.75	-1.4
3,046,725	-	sdhD	LU632_RS16110	0.76	-3.4
3,046,726	+	sdhD	LU632_RS16110	0.76	-0.1
3,046,726	+	sdhD	LU632_RS16110	0.76	-1.0
3,046,726	+	sdhD	LU632_RS16110	0.76	-1.1
3,046,727	-	sdhD	LU632_RS16110	0.76	-0.9
3,046,805	-				-1.0
3,046,927	-	sdhC	LU632_RS16115	0.32	-2.6
3,046,982	+	sdhC	LU632_RS16115	0.46	-0.6
3,046,988	+	sdhC	LU632_RS16115	0.47	+0.5
3,046,989	-	sdhC	LU632_RS16115	0.48	-1.7
3,047,064	+	sdhC	LU632_RS16115	0.67	-1.1
3,047,064	+	sdhC	LU632_RS16115	0.67	-0.5
3,047,065	-	sdhC	LU632_RS16115	0.67	-2.6
3,047,065	-	sdhC	LU632_RS16115	0.67	-0.0
3,047,065	-	sdhC	LU632_RS16115	0.67	-1.6
3,047,098	-	sdhC	LU632_RS16115	0.76	-1.5
3,047,098	-	sdhC	LU632_RS16115	0.76	-1.2
3,047,247	-				-1.4
3,047,248	+				-0.6
3,047,266	-				-1.6
3,047,525	+				-2.2
3,047,533	+				-0.7
3,047,533	+				+3.0
3,047,534	-				+5.1
3,047,557	-				-1.4
3,047,561	-				-0.4
3,047,561	-				-0.4
3,047,580	+				-0.0
3,047,580	+				-1.2
3,047,581	-				-0.9
3,047,581	-				-2.6
3,047,583	+				-0.7
3,047,583	+				-0.3
3,047,583	+				+2.9
3,047,583	+				-3.3
3,047,584	-				-1.3
3,047,584	-				-0.4
3,047,584	-				+0.5
3,047,588	-				-2.2
3,047,588	-				-0.6
3,047,594	+				+0.9
3,047,699	+				+0.8
3,047,700	-				-0.7
3,047,700	-				-0.3
3,047,701	+				-0.0
3,047,722	+				-0.8
3,047,723	-				-0.5
3,047,723	-				+0.2
3,047,723	-				-1.1
3,047,723	-				-0.9
3,047,878	+				+0.1
3,047,878	+				+0.5
3,047,916	-				-1.1
3,047,979	+		LU632_RS16120	0.14	-1.2
3,047,979	+		LU632_RS16120	0.14	-0.3
3,047,979	+		LU632_RS16120	0.14	+0.5
3,047,980	-		LU632_RS16120	0.14	-0.8
3,047,980	-		LU632_RS16120	0.14	-0.3
3,047,980	-		LU632_RS16120	0.14	-1.1
3,047,980	-		LU632_RS16120	0.14	-0.2
3,047,980	-		LU632_RS16120	0.14	-0.5
3,048,023	+		LU632_RS16120	0.17	-0.4
3,048,048	-		LU632_RS16120	0.19	-1.1
3,048,048	-		LU632_RS16120	0.19	-0.1
3,048,066	+		LU632_RS16120	0.20	+0.7
3,048,067	-		LU632_RS16120	0.20	-1.9
3,048,067	-		LU632_RS16120	0.20	-1.8
3,048,067	-		LU632_RS16120	0.20	-0.9
3,048,067	-		LU632_RS16120	0.20	-0.2
3,048,096	-		LU632_RS16120	0.23	-0.4
3,048,157	+		LU632_RS16120	0.27	+0.2
3,048,157	+		LU632_RS16120	0.27	+0.6
3,048,157	+		LU632_RS16120	0.27	-0.8
3,048,158	-		LU632_RS16120	0.27	-1.5