Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15790

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,987,317	-				-0.7
2,987,324	+				+0.5
2,987,324	+				-0.7
2,987,324	+				+0.1
2,987,517	-				+0.7
2,987,617	+				-3.3
2,987,617	+				+0.5
2,987,618	-				+0.5
2,987,618	-				-2.0
2,987,618	-				-0.9
2,987,618	-				+3.1
2,987,619	+				+1.2
2,987,676	-				+4.2
2,987,699	+		LU632_RS15785	0.13	+1.8
2,987,700	-		LU632_RS15785	0.14	+2.1
2,987,700	-		LU632_RS15785	0.14	-1.3
2,987,702	+		LU632_RS15785	0.14	-3.6
2,987,703	-		LU632_RS15785	0.14	-0.0
2,987,703	-		LU632_RS15785	0.14	+0.3
2,987,837	-		LU632_RS15785	0.46	+0.8
2,987,864	+		LU632_RS15785	0.52	-0.5
2,987,899	+		LU632_RS15785	0.61	+0.5
2,987,899	+		LU632_RS15785	0.61	+0.0
2,987,900	-		LU632_RS15785	0.61	-2.5
2,987,920	+		LU632_RS15785	0.66	-0.8
2,987,956	+		LU632_RS15785	0.74	-0.3
2,988,003	+		LU632_RS15785	0.85	-1.9
2,988,065	+				+1.3
2,988,066	-				-2.1
2,988,092	-				+0.8
2,988,166	+				-3.1
2,988,166	+				+0.3
2,988,167	-				-1.3
2,988,201	-				+0.4
2,988,305	-		LU632_RS15790	0.20	-1.4
2,988,377	-		LU632_RS15790	0.29	-1.4
2,988,400	+		LU632_RS15790	0.32	-0.5
2,988,401	-		LU632_RS15790	0.32	-0.5
2,988,479	+		LU632_RS15790	0.42	+1.3
2,988,537	+		LU632_RS15790	0.50	-0.5
2,988,538	-		LU632_RS15790	0.50	-0.1
2,988,538	-		LU632_RS15790	0.50	-1.7
2,988,575	+		LU632_RS15790	0.55	+1.3
2,988,605	+		LU632_RS15790	0.59	+2.8
2,988,656	+		LU632_RS15790	0.65	-0.0
2,988,656	+		LU632_RS15790	0.65	+0.3
2,988,657	-		LU632_RS15790	0.65	+0.5
2,988,754	+		LU632_RS15790	0.78	+2.5
2,988,755	-		LU632_RS15790	0.78	+2.5
2,988,850	+				+0.6
2,988,850	+				+0.0
2,988,851	-				-0.5
2,988,908	+				+1.0
2,988,909	-				-0.2
2,988,911	-				-0.6
2,988,911	-				-1.5
2,988,911	-				-2.7
2,988,931	-				+0.9
2,989,152	+		LU632_RS15795	0.43	+0.6
2,989,152	+		LU632_RS15795	0.43	-0.4
2,989,168	+		LU632_RS15795	0.46	-1.8
2,989,168	+		LU632_RS15795	0.46	-1.9
2,989,168	+		LU632_RS15795	0.46	-0.7
2,989,169	-		LU632_RS15795	0.46	-2.0
2,989,170	+		LU632_RS15795	0.46	-0.5
2,989,170	+		LU632_RS15795	0.46	-0.9
2,989,170	+		LU632_RS15795	0.46	+1.0
2,989,170	+		LU632_RS15795	0.46	+0.4
2,989,170	+		LU632_RS15795	0.46	+2.9
2,989,170	+		LU632_RS15795	0.46	+0.1
2,989,170	+		LU632_RS15795	0.46	+0.1
2,989,170	+		LU632_RS15795	0.46	-0.5
2,989,170	+		LU632_RS15795	0.46	+1.3
2,989,170	+		LU632_RS15795	0.46	+2.4
2,989,171	-		LU632_RS15795	0.47	-2.1
2,989,171	-		LU632_RS15795	0.47	+0.5
2,989,171	-		LU632_RS15795	0.47	+2.2
2,989,171	-		LU632_RS15795	0.47	+1.7
2,989,171	-		LU632_RS15795	0.47	-2.2
2,989,171	-		LU632_RS15795	0.47	+0.4
2,989,171	-		LU632_RS15795	0.47	+1.9
2,989,273	+		LU632_RS15795	0.66	+0.2
2,989,274	-		LU632_RS15795	0.66	-0.7
2,989,274	-		LU632_RS15795	0.66	+0.3
2,989,275	+		LU632_RS15795	0.67	+0.8
2,989,276	-		LU632_RS15795	0.67	-1.1
2,989,276	-		LU632_RS15795	0.67	+4.0
2,989,318	-		LU632_RS15795	0.75	-1.1
2,989,389	-		LU632_RS15795	0.89	-1.1
2,989,455	+				+0.4
2,989,456	-				-1.8
2,989,456	-				+0.8
2,989,459	+				-1.1
2,989,459	+				-1.8
2,989,460	-				-1.4
2,989,460	-				-2.7
2,989,483	+				+1.0
2,989,484	-				+2.5
2,989,503	-				-0.1
2,989,554	-		LU632_RS15800	0.26	+1.0
2,989,559	+		LU632_RS15800	0.33	+1.6
2,989,560	-		LU632_RS15800	0.35	+2.6
2,989,560	-		LU632_RS15800	0.35	-0.7
2,989,668	-				+0.7
2,989,668	-				+1.0
2,989,733	+				-0.6
2,989,915	+		LU632_RS15805	0.53	-1.1