Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15640

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,961,646	+				-1.5
2,961,647	-				-0.2
2,961,650	+				-2.1
2,961,651	-				+0.2
2,961,656	-				+1.1
2,961,666	-				+0.1
2,961,727	+				-1.3
2,961,727	+				-1.5
2,961,728	-				+1.8
2,961,728	-				-0.2
2,961,728	-				-0.6
2,961,748	+				-1.1
2,961,748	+				-1.5
2,961,752	+				+1.3
2,961,753	-				-0.4
2,961,760	+				-0.8
2,961,920	+		LU632_RS15630	0.30	-1.2
2,961,944	+		LU632_RS15630	0.42	+2.1
2,961,980	-		LU632_RS15630	0.60	-0.5
2,962,038	-		LU632_RS15630	0.88	-1.1
2,962,071	+				+0.3
2,962,071	+				-0.3
2,962,224	-		LU632_RS15635	0.47	+0.6
2,962,298	-		LU632_RS15635	0.69	+3.6
2,962,322	-		LU632_RS15635	0.76	-1.5
2,962,370	-				-1.5
2,962,370	-				-0.9
2,962,405	-				-2.7
2,962,444	-				-1.1
2,962,545	+		LU632_RS15640	0.17	-2.1
2,962,579	+		LU632_RS15640	0.28	-1.1
2,962,639	-		LU632_RS15640	0.48	-1.2
2,962,677	-		LU632_RS15640	0.61	-2.9
2,962,767	+				+1.1
2,962,767	+				-0.9
2,962,768	-				-0.5
2,962,857	+				-0.2
2,962,893	-				-0.2
2,962,986	+		LU632_RS15645	0.12	+0.4
2,962,987	-		LU632_RS15645	0.12	+2.3
2,962,987	-		LU632_RS15645	0.12	+0.2
2,963,253	+		LU632_RS15645	0.39	-0.7
2,963,336	+		LU632_RS15645	0.47	+0.7
2,963,337	-		LU632_RS15645	0.47	-0.2
2,963,337	-		LU632_RS15645	0.47	+0.5
2,963,342	-		LU632_RS15645	0.48	-0.5
2,963,388	-		LU632_RS15645	0.52	+0.1
2,963,401	+		LU632_RS15645	0.53	+1.1
2,963,401	+		LU632_RS15645	0.53	-0.7
2,963,401	+		LU632_RS15645	0.53	+0.7
2,963,402	-		LU632_RS15645	0.53	-1.4
2,963,455	-		LU632_RS15645	0.59	+0.5
2,963,539	-		LU632_RS15645	0.67	-2.3
2,963,572	-		LU632_RS15645	0.70	+1.1
2,963,582	+		LU632_RS15645	0.71	+0.6
2,963,583	-		LU632_RS15645	0.71	-1.9
2,963,620	-		LU632_RS15645	0.75	+1.4
2,963,674	-		LU632_RS15645	0.80	+1.0
2,963,674	-		LU632_RS15645	0.80	+2.5
2,963,709	+		LU632_RS15645	0.84	+1.4
2,963,709	+		LU632_RS15645	0.84	-1.0
2,963,710	-		LU632_RS15645	0.84	-1.0
2,963,711	+		LU632_RS15645	0.84	-1.5
2,963,712	-		LU632_RS15645	0.84	-3.6
2,963,746	-		LU632_RS15645	0.88	-1.5
2,963,764	+		LU632_RS15645	0.89	+0.2
2,963,764	+		LU632_RS15645	0.89	+0.5
2,963,765	-		LU632_RS15645	0.89	-1.0
2,963,786	-				-0.8