Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15425

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,919,626	-	rseB	LU632_RS15415	0.67	-1.4
2,919,626	-	rseB	LU632_RS15415	0.67	+0.2
2,919,643	+	rseB	LU632_RS15415	0.68	-0.5
2,919,735	+	rseB	LU632_RS15415	0.78	+1.5
2,919,743	-	rseB	LU632_RS15415	0.79	-1.5
2,919,790	+	rseB	LU632_RS15415	0.84	-1.5
2,919,795	-	rseB	LU632_RS15415	0.84	-0.2
2,919,795	-	rseB	LU632_RS15415	0.84	-1.5
2,919,801	-	rseB	LU632_RS15415	0.85	-3.5
2,919,805	-	rseB	LU632_RS15415	0.85	-1.1
2,920,333	-	rseA	LU632_RS15420	0.60	-0.2
2,920,340	+	rseA	LU632_RS15420	0.61	-1.8
2,920,635	+				-1.8
2,920,659	+				-2.0
2,920,660	-				-3.2
2,920,678	+				-3.0
2,920,714	-	rpoE	LU632_RS15425	0.16	+1.5
2,920,723	+	rpoE	LU632_RS15425	0.17	+1.1
2,920,724	-	rpoE	LU632_RS15425	0.17	-1.7
2,920,734	-	rpoE	LU632_RS15425	0.19	-1.5
2,920,734	-	rpoE	LU632_RS15425	0.19	-1.7
2,920,771	-	rpoE	LU632_RS15425	0.26	-2.5
2,920,837	+	rpoE	LU632_RS15425	0.37	-4.1
2,920,837	+	rpoE	LU632_RS15425	0.37	-2.0
2,920,838	-	rpoE	LU632_RS15425	0.37	-1.8
2,920,838	-	rpoE	LU632_RS15425	0.37	-1.4
2,920,838	-	rpoE	LU632_RS15425	0.37	-1.1
2,920,838	-	rpoE	LU632_RS15425	0.37	-1.1
2,920,838	-	rpoE	LU632_RS15425	0.37	-2.8
2,920,838	-	rpoE	LU632_RS15425	0.37	-1.4
2,920,959	+	rpoE	LU632_RS15425	0.58	-2.3
2,920,960	+	rpoE	LU632_RS15425	0.58	+0.5
2,920,986	+	rpoE	LU632_RS15425	0.63	-1.2
2,921,038	-	rpoE	LU632_RS15425	0.72	-4.5
2,921,051	-	rpoE	LU632_RS15425	0.74	-2.1
2,921,053	+	rpoE	LU632_RS15425	0.74	-1.3
2,921,054	-	rpoE	LU632_RS15425	0.75	-0.7
2,921,055	+	rpoE	LU632_RS15425	0.75	-2.7
2,921,055	+	rpoE	LU632_RS15425	0.75	-0.0
2,921,056	-	rpoE	LU632_RS15425	0.75	-2.7
2,921,206	+				-1.9
2,921,221	+				-2.7
2,921,222	-				+0.8
2,921,222	-				+2.2
2,921,283	+				-2.1
2,921,289	-				-0.2
2,921,406	+				-0.6
2,921,406	+				+2.5
2,921,406	+				+0.5
2,921,406	+				+0.5
2,921,406	+				-0.8
2,921,407	-				+0.0
2,921,407	-				-0.3
2,921,422	-				-1.1
2,921,570	+				-2.1
2,921,650	+				+2.7
2,921,761	+				-0.5
2,921,799	+				-3.0
2,921,799	+				-1.1
2,921,938	+	nadB	LU632_RS15430	0.17	+0.5
2,921,938	+	nadB	LU632_RS15430	0.17	-2.0
2,921,939	-	nadB	LU632_RS15430	0.17	+0.3
2,922,042	-	nadB	LU632_RS15430	0.24	+6.6
2,922,138	-	nadB	LU632_RS15430	0.30	+0.5
2,922,138	-	nadB	LU632_RS15430	0.30	+1.3