Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15280

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,892,123	+				-0.5
2,892,181	+		LU632_RS15275	0.10	-2.6
2,892,182	-		LU632_RS15275	0.10	-0.6
2,892,182	-		LU632_RS15275	0.10	-0.3
2,892,250	+		LU632_RS15275	0.18	-1.1
2,892,321	-		LU632_RS15275	0.26	-0.1
2,892,365	+		LU632_RS15275	0.32	+2.2
2,892,365	+		LU632_RS15275	0.32	-0.8
2,892,365	+		LU632_RS15275	0.32	+1.3
2,892,468	-		LU632_RS15275	0.44	+0.9
2,892,468	-		LU632_RS15275	0.44	+1.1
2,892,573	+		LU632_RS15275	0.56	+1.0
2,892,675	-		LU632_RS15275	0.68	+0.5
2,892,947	-				-0.6
2,892,953	+				+0.2
2,892,971	-				+2.3
2,893,046	-				-0.5
2,893,065	+				-0.5
2,893,067	+				+0.1
2,893,068	-				-0.5
2,893,179	-		LU632_RS15280	0.12	-1.1
2,893,179	-		LU632_RS15280	0.12	-0.5
2,893,286	+		LU632_RS15280	0.24	-0.7
2,893,472	+		LU632_RS15280	0.44	-2.2
2,893,473	-		LU632_RS15280	0.44	-2.7
2,893,486	+		LU632_RS15280	0.46	+3.1
2,893,487	-		LU632_RS15280	0.46	-2.8
2,893,490	+		LU632_RS15280	0.46	-0.1
2,893,491	-		LU632_RS15280	0.46	+3.5
2,893,491	-		LU632_RS15280	0.46	+2.2
2,893,491	-		LU632_RS15280	0.46	-2.5
2,893,491	-		LU632_RS15280	0.46	+0.6
2,893,491	-		LU632_RS15280	0.46	+1.0
2,893,492	+		LU632_RS15280	0.46	-0.3
2,893,492	+		LU632_RS15280	0.46	-0.6
2,893,543	+		LU632_RS15280	0.52	-1.1
2,893,694	+		LU632_RS15280	0.68	+0.5
2,893,808	+		LU632_RS15280	0.81	-2.3
2,893,811	-		LU632_RS15280	0.81	+0.3
2,893,811	-		LU632_RS15280	0.81	+2.3
2,893,821	-		LU632_RS15280	0.82	+0.2
2,893,821	-		LU632_RS15280	0.82	+0.5
2,893,863	-		LU632_RS15280	0.87	+0.5
2,893,992	+				+0.7
2,894,037	+		LU632_RS15285	0.13	-0.5
2,894,149	+		LU632_RS15285	0.38	+0.2
2,894,167	+		LU632_RS15285	0.42	-0.5
2,894,167	+		LU632_RS15285	0.42	-2.1
2,894,168	-		LU632_RS15285	0.42	-0.3
2,894,240	-		LU632_RS15285	0.58	+0.6
2,894,258	+		LU632_RS15285	0.62	-1.1
2,894,340	+		LU632_RS15285	0.80	-1.5
2,894,341	-		LU632_RS15285	0.80	-0.5
2,894,371	+		LU632_RS15285	0.87	-0.0
2,894,371	+		LU632_RS15285	0.87	-0.7
2,894,422	+				-0.8
2,894,423	-				-1.5
2,894,423	-				+3.5
2,894,426	+				-0.0
2,894,426	+				-0.5
2,894,427	-				-2.1
2,894,479	+				+1.7
2,894,479	+				-1.1
2,894,479	+				-0.1
2,894,479	+				-0.6
2,894,480	-				+3.4
2,894,480	-				+1.3
2,894,480	-				+0.3
2,894,480	-				-0.5
2,894,480	-				+3.1
2,894,480	-				+0.2
2,894,504	+				-1.0
2,894,529	+				-0.8
2,894,530	-				+1.1
2,894,570	-				+1.5
2,894,615	-				-1.4
2,894,673	+				-0.3
2,894,673	+				+0.1
2,894,673	+				+1.0
2,894,686	+				+0.9
2,894,686	+				-4.2
2,894,716	+				+0.7
2,894,719	+				-1.8
2,894,740	+				-0.8
2,894,760	+				+0.1
2,894,761	-				-0.9
2,894,797	+				-2.8
2,894,798	-				-0.8
2,894,800	+				-0.6
2,894,800	+				+2.2
2,894,801	-				+0.5
2,894,814	-				+0.3
2,894,915	-				+0.6